Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   R5P06_RS07200 Genome accession   NZ_CP137633
Coordinates   1298612..1300144 (-) Length   510 a.a.
NCBI ID   WP_318843723.1    Uniprot ID   -
Organism   Candidatus Thioglobus autotrophicus strain EF3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1293612..1305144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5P06_RS07175 (R5P06_07175) pmbA 1294599..1295918 (-) 1320 WP_318843721.1 metalloprotease PmbA -
  R5P06_RS07180 (R5P06_07180) - 1295922..1296689 (-) 768 WP_053951257.1 sulfite exporter TauE/SafE family protein -
  R5P06_RS07185 (R5P06_07185) - 1296689..1297537 (-) 849 WP_053951258.1 HlyC/CorC family transporter -
  R5P06_RS07190 (R5P06_07190) - 1297577..1297873 (-) 297 WP_053951259.1 RnfH family protein -
  R5P06_RS07195 (R5P06_07195) hisA 1297873..1298607 (-) 735 WP_318843722.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase -
  R5P06_RS07200 (R5P06_07200) comM 1298612..1300144 (-) 1533 WP_318843723.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  R5P06_RS07205 (R5P06_07205) tsaD 1300114..1301139 (-) 1026 WP_318843724.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  R5P06_RS07210 (R5P06_07210) lptB 1301126..1301860 (-) 735 WP_053951262.1 LPS export ABC transporter ATP-binding protein -
  R5P06_RS07215 (R5P06_07215) - 1301896..1302648 (-) 753 WP_053951263.1 biotin--[acetyl-CoA-carboxylase] ligase -
  R5P06_RS07220 (R5P06_07220) - 1302627..1302983 (-) 357 WP_053951264.1 diacylglycerol kinase -
  R5P06_RS07225 (R5P06_07225) truA 1303040..1303807 (+) 768 WP_318843725.1 tRNA pseudouridine(38-40) synthase TruA -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 55978.28 Da        Isoelectric Point: 7.9332

>NTDB_id=899589 R5P06_RS07200 WP_318843723.1 1298612..1300144(-) (comM) [Candidatus Thioglobus autotrophicus strain EF3]
MESRRFGGGVSQLAKIFTRASTGLDAPIVTIEVHISGGLPGFSIVGLPEGALKESKDRVRSALINSRFKFPKGRITVSLA
PANLPKRGGRYDLPIALGILLASGQVKPEVDITKIEFYGELGLDGLLHTTEGLLPAIIEAHKAKHTLVIPADDYAQCALA
EQAKIFPAKYLLQVCEFLSGVGEPEQCSTPSEFQAIYANDFSQVKGQYQAKRALEVAASGGHNILLRGTPGSGKTMLAER
LPSILPPLSTEKALQRASIYSVAGKILDSSQMYRRAFRAPHHSSSAVSLVGGGSYPRPGEISLAHEGVLFLDELPEFPRH
VLETLRQPLESGEIHVSRAQQQVTFPANFQLVAAMNPCPCGYYGDGTSKCHCTQDQIRKYQVKISGPLLDRIDMVLEVPP
LPKELLLAQKSESIENSETIRARVLDCYNMQLNRQGKLNDRLSPDEIDNLIILDKDNKQLLESVIDKLHLSARAYHRILK
VARTIADLDHAQEVEQRHLIEAIGYRRHNG

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=899589 R5P06_RS07200 WP_318843723.1 1298612..1300144(-) (comM) [Candidatus Thioglobus autotrophicus strain EF3]
ATGGAGTCTAGAAGATTTGGAGGCGGTGTGAGTCAACTGGCTAAAATTTTTACGCGCGCCTCAACAGGGCTTGATGCGCC
AATAGTTACCATTGAAGTGCATATTTCTGGTGGCTTGCCTGGGTTTTCTATTGTTGGATTGCCTGAAGGTGCACTCAAAG
AAAGTAAAGATCGAGTTCGATCTGCTCTGATTAATTCACGTTTTAAATTCCCCAAAGGGCGTATTACTGTTAGCTTGGCA
CCGGCCAACCTGCCCAAGCGTGGTGGACGCTATGATTTGCCTATTGCACTTGGCATACTGCTGGCCTCTGGCCAAGTTAA
ACCTGAAGTTGATATAACAAAGATTGAATTCTATGGCGAGCTAGGTTTGGACGGCTTGTTGCATACGACTGAGGGCCTAC
TGCCGGCTATTATTGAGGCGCACAAGGCCAAACACACACTGGTTATTCCCGCTGATGATTATGCACAATGTGCTCTGGCT
GAACAGGCAAAAATATTTCCAGCTAAGTATTTGTTGCAAGTTTGTGAATTTTTATCAGGTGTGGGCGAGCCTGAGCAGTG
CTCAACCCCGAGTGAATTTCAAGCAATTTATGCGAATGATTTTTCGCAGGTTAAAGGCCAATATCAGGCTAAACGCGCAT
TGGAAGTTGCGGCTAGTGGCGGGCATAATATTTTATTGCGCGGCACACCAGGCTCTGGCAAAACCATGTTGGCAGAAAGG
CTGCCTTCGATACTACCACCCTTGAGCACTGAGAAAGCTTTACAAAGGGCTTCTATTTATTCCGTTGCTGGAAAAATACT
AGATAGCTCGCAAATGTATCGTCGAGCATTTCGAGCGCCACATCATTCATCTTCAGCCGTCTCATTGGTTGGCGGCGGCT
CTTACCCTAGGCCGGGAGAGATTTCTCTTGCGCATGAAGGGGTGTTGTTTTTAGATGAATTGCCTGAATTTCCGCGCCAT
GTTTTAGAAACTTTAAGACAACCCTTAGAGAGTGGCGAGATACATGTTTCACGGGCACAACAACAAGTCACTTTTCCGGC
TAATTTTCAGTTGGTTGCTGCCATGAACCCTTGTCCGTGCGGGTATTATGGTGATGGTACTAGTAAGTGTCATTGTACGC
AGGATCAAATTCGAAAATATCAAGTTAAGATTTCGGGCCCATTATTAGACCGTATTGATATGGTATTAGAGGTTCCACCT
TTGCCAAAAGAGCTGCTATTAGCTCAAAAAAGTGAGTCAATAGAAAATAGCGAAACCATTAGAGCGCGTGTATTAGATTG
TTATAATATGCAGCTAAACAGACAGGGTAAATTAAATGATCGTCTAAGTCCAGACGAGATTGATAACCTGATTATTTTAG
ATAAAGATAATAAGCAATTATTAGAGAGTGTGATTGACAAACTGCACCTTTCGGCAAGAGCTTATCACCGAATTTTAAAA
GTGGCTAGAACCATTGCTGATTTAGATCATGCCCAAGAAGTTGAGCAGCGCCATCTAATTGAAGCCATTGGGTATCGGCG
ACATAACGGATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)

Subunit ChlI of Mg-chelatase (ChlI)

(31-152)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(415-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.703

97.843

0.506
  comM Vibrio campbellii strain DS40M4

51.21

97.255

0.498
  comM Glaesserella parasuis strain SC1401

50.602

97.647

0.494
  comM Haemophilus influenzae Rd KW20

49.402

98.431

0.486
  comM Legionella pneumophila str. Paris

49.296

97.451

0.48
  comM Legionella pneumophila strain ERS1305867

49.296

97.451

0.48
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.443

99.216

0.461