Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   R5P05_RS07355 Genome accession   NZ_CP137632
Coordinates   1353752..1355284 (-) Length   510 a.a.
NCBI ID   WP_318844670.1    Uniprot ID   -
Organism   Candidatus Thioglobus autotrophicus strain EF2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1348752..1360284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5P05_RS07330 (R5P05_07330) pmbA 1349739..1351058 (-) 1320 WP_318843721.1 metalloprotease PmbA -
  R5P05_RS07335 (R5P05_07335) - 1351062..1351829 (-) 768 WP_318844668.1 sulfite exporter TauE/SafE family protein -
  R5P05_RS07340 (R5P05_07340) - 1351829..1352677 (-) 849 WP_318844669.1 CBS domain-containing protein -
  R5P05_RS07345 (R5P05_07345) - 1352717..1353013 (-) 297 WP_053951259.1 RnfH family protein -
  R5P05_RS07350 (R5P05_07350) hisA 1353013..1353747 (-) 735 WP_318843722.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase -
  R5P05_RS07355 (R5P05_07355) comM 1353752..1355284 (-) 1533 WP_318844670.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  R5P05_RS07360 (R5P05_07360) tsaD 1355254..1356279 (-) 1026 WP_082319633.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  R5P05_RS07365 (R5P05_07365) lptB 1356266..1357000 (-) 735 WP_053951262.1 LPS export ABC transporter ATP-binding protein -
  R5P05_RS07370 (R5P05_07370) - 1357036..1357788 (-) 753 WP_053951263.1 biotin--[acetyl-CoA-carboxylase] ligase -
  R5P05_RS07375 (R5P05_07375) - 1357767..1358123 (-) 357 WP_053951264.1 diacylglycerol kinase -
  R5P05_RS07380 (R5P05_07380) truA 1358180..1358947 (+) 768 WP_318844671.1 tRNA pseudouridine(38-40) synthase TruA -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 55883.14 Da        Isoelectric Point: 7.9345

>NTDB_id=899578 R5P05_RS07355 WP_318844670.1 1353752..1355284(-) (comM) [Candidatus Thioglobus autotrophicus strain EF2]
MESRRFGGGVSQLAKIFTRASTGLDAPIVTIEVHISGGLPGFSIVGLPEGALKESKDRVRSALINSRFKSPKGRITVSLA
PANLPKRGGRYDLPIALGILLASGQVKPEVDITKIEFYGELGLDGLLHTTEGLLPAIIEAHKAKHTLVIPADDYAQCALA
EQAKIFPAKHLLQVCEFLSGVGEPEQCSTPSEFQAIYANDFSQVKGQYQAKRALEVAASGGHNILLRGTPGSGKTMLAER
LPSILPPLSTEKALQRASIYSVAGKILDSSQMYRRAFRAPHHSSSAVSLVGGGSYPRPGEISLAHEGVLFLDELPEFPRQ
VLETLRQPLESGEIHVSRAQQQVTFPANFQLVAAMNPCPCGYYGDGTSKCHCTQDQIRKYQVKISGPLLDRIDMVLEVPP
LPKELLLAQKSESIENSETIRARVLDCYNMQLNRQGKLNDRLSPDEIDNLIILDKDNKQLLESVIDKLHLSARAYHRILK
VARTIADLDHAQEVEQRHLIEAIGYRRHNG

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=899578 R5P05_RS07355 WP_318844670.1 1353752..1355284(-) (comM) [Candidatus Thioglobus autotrophicus strain EF2]
ATGGAGTCTAGAAGATTTGGAGGCGGTGTGAGTCAACTGGCTAAAATTTTTACGCGCGCCTCAACAGGGCTTGATGCGCC
AATAGTTACCATTGAAGTGCATATTTCTGGTGGCTTGCCTGGGTTTTCTATTGTTGGATTGCCTGAAGGTGCACTCAAAG
AAAGTAAAGATCGAGTTCGATCTGCTCTGATTAATTCACGTTTTAAATCCCCCAAAGGGCGTATTACTGTTAGCTTGGCA
CCGGCCAACCTGCCCAAGCGTGGTGGACGCTATGATTTGCCTATTGCACTTGGCATACTGCTGGCCTCTGGCCAAGTTAA
ACCTGAAGTTGATATAACAAAGATTGAATTCTATGGCGAGCTAGGTTTGGACGGCTTGTTGCATACGACTGAGGGCCTAC
TGCCGGCTATTATTGAGGCGCACAAGGCCAAACACACACTGGTTATTCCCGCTGATGATTATGCACAATGTGCTCTGGCT
GAACAGGCAAAAATATTTCCAGCTAAGCATTTGTTGCAAGTTTGTGAATTTTTATCAGGTGTGGGCGAGCCTGAGCAGTG
CTCAACCCCGAGTGAATTTCAAGCAATTTATGCGAATGATTTTTCGCAGGTTAAAGGCCAATATCAGGCTAAACGCGCAT
TGGAAGTTGCGGCTAGTGGCGGGCATAATATTTTATTGCGCGGTACACCAGGCTCTGGCAAAACCATGTTGGCAGAAAGG
CTGCCTTCGATACTACCACCCTTGAGCACTGAGAAAGCTTTACAAAGGGCTTCTATTTATTCCGTTGCTGGAAAAATACT
AGATAGCTCGCAAATGTATCGTCGAGCATTTCGAGCGCCACATCATTCATCTTCAGCCGTCTCATTGGTTGGCGGCGGCT
CTTACCCTAGGCCGGGAGAGATTTCTCTTGCGCATGAAGGGGTGTTGTTTTTAGATGAGTTGCCTGAATTTCCGCGCCAG
GTTTTAGAAACTTTAAGACAACCCTTAGAGAGTGGCGAGATACATGTTTCACGGGCACAACAACAAGTCACTTTTCCGGC
TAATTTTCAGTTGGTTGCTGCCATGAACCCTTGTCCGTGCGGGTATTATGGCGATGGTACTAGCAAGTGTCATTGTACGC
AGGATCAAATTCGAAAATACCAAGTTAAAATTTCGGGCCCATTATTAGACCGTATTGATATGGTATTAGAGGTTCCACCT
TTGCCAAAAGAGCTGCTATTAGCTCAAAAAAGTGAGTCAATAGAAAATAGCGAAACCATTAGAGCACGTGTATTAGATTG
TTATAATATGCAGCTAAACAGACAGGGTAAATTAAATGATCGTCTAAGTCCAGACGAGATTGATAACCTGATTATTTTAG
ATAAAGATAATAAGCAATTATTAGAGAGTGTGATTGACAAACTGCACCTTTCGGCAAGAGCTTATCACCGAATTTTAAAA
GTGGCTAGAACCATTGCTGATTTAGATCATGCCCAAGAAGTTGAGCAGCGCCATCTAATTGAAGCCATTGGGTATCGGCG
ACATAACGGATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(415-506)

Subunit ChlI of Mg-chelatase (ChlI)

(31-152)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.503

97.843

0.504
  comM Vibrio campbellii strain DS40M4

51.008

97.255

0.496
  comM Glaesserella parasuis strain SC1401

50.602

97.647

0.494
  comM Haemophilus influenzae Rd KW20

49.402

98.431

0.486
  comM Legionella pneumophila str. Paris

49.296

97.451

0.48
  comM Legionella pneumophila strain ERS1305867

49.296

97.451

0.48
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.443

99.216

0.461