Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   R2B70_RS00560 Genome accession   NZ_CP137630
Coordinates   120447..121964 (-) Length   505 a.a.
NCBI ID   WP_216991426.1    Uniprot ID   -
Organism   Aeromonas sp. XH     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 115447..126964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2B70_RS00535 (R2B70_00535) - 116672..117307 (-) 636 WP_216991422.1 nicotinamidase -
  R2B70_RS00540 (R2B70_00540) - 117382..118032 (+) 651 WP_042078198.1 NUDIX hydrolase -
  R2B70_RS00545 (R2B70_00545) - 118029..118517 (+) 489 WP_216991423.1 DUF523 domain-containing protein -
  R2B70_RS00550 (R2B70_00550) - 118460..119407 (-) 948 WP_318162377.1 acyltransferase -
  R2B70_RS00555 (R2B70_00555) - 119415..120314 (-) 900 WP_318162378.1 acyltransferase -
  R2B70_RS00560 (R2B70_00560) comM 120447..121964 (-) 1518 WP_216991426.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  R2B70_RS00565 (R2B70_00565) ilvG 122349..123995 (+) 1647 WP_318162379.1 acetolactate synthase 2 catalytic subunit -
  R2B70_RS00570 (R2B70_00570) ilvM 123992..124255 (+) 264 WP_042078191.1 acetolactate synthase 2 small subunit -
  R2B70_RS00575 (R2B70_00575) - 124268..125200 (+) 933 WP_318162380.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 54886.87 Da        Isoelectric Point: 7.9900

>NTDB_id=899514 R2B70_RS00560 WP_216991426.1 120447..121964(-) (comM) [Aeromonas sp. XH]
MSLAVVYSRASLGITAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPAKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPSVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPEPQSTETPPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAQRG
ESSGQIRERVLRARERMLARNGKLNNLLDSREIEEICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGRPAI
EREHLIEALGYRAMDRLLTRLRGGQ

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=899514 R2B70_RS00560 WP_216991426.1 120447..121964(-) (comM) [Aeromonas sp. XH]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTGGGGATCACGGCGCCGCAAGTCACGGTGGAGGTGCACCTCTCCAA
CGGTCTGCCCGCCTTCAACATGGTGGGGCTGCCGGAAACCTCGGTGAAAGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAACTTCGAGTTCCCGGCCAAGCACATCACGGTCAATCTGGCCCCCGCCGACCTGCCCAAGGAGGGGGGACGC
TTCGATCTGGCCATCGCCATCGGCATTCTCGCTGCTTCCAAGCAGATACCGGCAAAATACCTGCTTGATCACGAATTTTT
GGGGGAGCTGGCCCTGACCGGCGAGATCCGCCCCGTACTCGGGGTGCTCCCCTCGGTGCTGGCCTGCCGGGACGCTGGCC
GCACCCTGCTGGTGCCGCGGGAGAACGGCCCCGAGGCTTCGCTTATTCAGGATGCCGAGGTGCGCACCGCCCACCAGCTG
CTGGCGGTCACCGCCTGGCTGGCGGGCCAGTACGAGCTCCCGTTGCCGGAGCCCCAGAGCACGGAGACGCCGCCCGATGT
GCCGGATCTGCAGGACGTGATCGGCCAGTCCCAGGCCAAGCGGGCACTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGTACCGGCAAGAGCATGCTGGCGAGCCGGCTGCCCGGCATTCTGCCGCCGCTGAGCGAGCAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACCCCGCGGGCCGGTCACTGGCACCACAGACCCTATCG
TACGCCGCACCACAGCGCCTCGGCGGTAGCCCTGGTGGGCGGTGGCAGTCACCCTCGTCCCGGCGAAATATCCCTGGCCC
ACAACGGCGTGCTGTTTCTGGACGAACTGCCCGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAACCGCTGGAGACG
GGCCACATCACCATCAGCCGCGCCGCCCGCCAGGTGGACTTTCCCGCCCGCTTCCAGCTGGTGGGGGCCATGAACCCCAG
CCCCTGCGGCCACTACGGCGACGGCCAGACCCGCTCCAGCCCGGACCAGATCCTGCGCTACCTCGGCAAGCTCTCAGGCC
CCTTCCTCGACCGGTTCGACCTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGGAGCCTGACCGGAAAGGCACAGCGGGGG
GAATCGAGCGGTCAGATCCGCGAACGGGTGCTGAGGGCGCGCGAGCGGATGCTGGCCCGCAACGGCAAGCTCAACAACCT
GCTGGACAGCCGTGAAATCGAAGAAATTTGCCGCTTATCACCGCAGGATGCCGAATTTCTGGAGAACGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCACCGGATCCTGCGGGTGTCGCGCACCATCGCCGATCTCGCAGGGCGGCCCGCCATC
GAGAGGGAGCATCTCATCGAGGCGCTCGGTTACCGGGCCATGGACCGGCTGCTGACGCGCCTGCGCGGCGGCCAGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.745

99.406

0.634
  comM Vibrio campbellii strain DS40M4

62.948

99.406

0.626
  comM Haemophilus influenzae Rd KW20

61.66

100

0.618
  comM Glaesserella parasuis strain SC1401

60.63

100

0.61
  comM Legionella pneumophila str. Paris

51.297

99.208

0.509
  comM Legionella pneumophila strain ERS1305867

51.297

99.208

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.365

100

0.467