Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   R5H38_RS08150 Genome accession   NZ_CP137602
Coordinates   1582414..1583340 (-) Length   308 a.a.
NCBI ID   WP_274504946.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 221006     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1577414..1588340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5H38_RS08135 thrC 1578711..1580195 (-) 1485 WP_217374203.1 threonine synthase -
  R5H38_RS08140 amiF 1580407..1581330 (-) 924 WP_277837437.1 ATP-binding cassette domain-containing protein Regulator
  R5H38_RS08145 amiE 1581340..1582404 (-) 1065 WP_274504252.1 ABC transporter ATP-binding protein Regulator
  R5H38_RS08150 amiD 1582414..1583340 (-) 927 WP_274504946.1 oligopeptide ABC transporter permease OppC Regulator
  R5H38_RS08155 amiC 1583340..1584839 (-) 1500 WP_274504253.1 ABC transporter permease Regulator
  R5H38_RS08160 amiA 1584917..1586884 (-) 1968 WP_318150540.1 peptide ABC transporter substrate-binding protein Regulator
  R5H38_RS08165 pbp3 1587098..1588339 (+) 1242 WP_277837440.1 D-alanyl-D-alanine carboxypeptidase PBP3 -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34591.45 Da        Isoelectric Point: 9.4261

>NTDB_id=899249 R5H38_RS08150 WP_274504946.1 1582414..1583340(-) (amiD) [Streptococcus parasuis strain 221006]
MSTIDKSKFQFVKRDDFASEVIDTPAYSYWNSVFRQFLKKKSTIVMLIILVAIVLMSFIYPIFANYDFNDVSKINDFSAR
YNWPNAEYWFGTDANGQSLFDGVWYGARNSILIALIATAINLVVGVILGGIWGVSKTFDKIMMEIYNVISNIPSLMIFIV
MSYALGAGFWNLILAFCLTGWIGVAFSIRIQIMRYRDLEYNLASRTLGTPTFKLVVKNLLPQLVSVIVTQASQSLPSYIS
TEAFLSYFGIGLPVTTPSLGRLLSKYAQNVTTNAYLFWIPLAALILVSLSLFIVGQNLSDASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=899249 R5H38_RS08150 WP_274504946.1 1582414..1583340(-) (amiD) [Streptococcus parasuis strain 221006]
ATGTCAACAATTGATAAAAGTAAATTTCAATTTGTAAAACGTGATGATTTTGCCTCGGAGGTAATTGATACTCCTGCCTA
CTCATATTGGAATTCTGTATTTCGACAGTTTCTAAAGAAAAAATCAACCATTGTAATGTTAATTATTTTGGTAGCCATCG
TCCTTATGAGTTTTATTTATCCCATTTTTGCAAATTATGATTTCAATGATGTAAGTAAAATTAATGATTTCAGCGCTCGT
TATAATTGGCCAAATGCCGAGTATTGGTTCGGAACTGATGCAAATGGACAGTCTCTATTTGATGGGGTTTGGTATGGAGC
AAGAAATTCAATTTTGATTGCACTTATTGCGACTGCTATTAACCTTGTCGTTGGTGTCATCCTTGGGGGAATCTGGGGTG
TATCAAAGACTTTTGATAAAATAATGATGGAAATTTACAATGTCATATCAAATATTCCATCACTAATGATTTTTATTGTA
ATGTCATATGCTCTTGGAGCTGGCTTCTGGAATTTGATATTAGCATTTTGTTTAACAGGATGGATTGGTGTAGCGTTTTC
AATCCGAATCCAGATTATGAGATATCGCGATTTGGAATATAATTTGGCTAGTCGCACGCTCGGTACTCCAACTTTTAAAT
TAGTAGTAAAAAACCTATTGCCACAATTGGTATCTGTGATAGTAACACAAGCCTCACAAAGTTTACCAAGCTATATTTCA
ACGGAGGCCTTCCTTTCATACTTTGGAATAGGGCTCCCTGTGACAACACCAAGTTTAGGTCGATTGCTTTCTAAGTATGC
TCAAAATGTGACTACCAATGCATACTTATTTTGGATTCCTTTAGCAGCGTTAATCTTAGTTTCGCTATCACTCTTCATTG
TTGGACAAAATTTGTCTGATGCAAGTGACCCACGTACACATAGATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

77.922

100

0.779
  amiD Streptococcus thermophilus LMG 18311

76.299

100

0.763
  amiD Streptococcus thermophilus LMD-9

76.299

100

0.763