Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   R5H38_RS08145 Genome accession   NZ_CP137602
Coordinates   1581340..1582404 (-) Length   354 a.a.
NCBI ID   WP_274504252.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 221006     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1576340..1587404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5H38_RS08130 - 1577339..1578607 (-) 1269 WP_318150539.1 MATE family efflux transporter -
  R5H38_RS08135 thrC 1578711..1580195 (-) 1485 WP_217374203.1 threonine synthase -
  R5H38_RS08140 amiF 1580407..1581330 (-) 924 WP_277837437.1 ATP-binding cassette domain-containing protein Regulator
  R5H38_RS08145 amiE 1581340..1582404 (-) 1065 WP_274504252.1 ABC transporter ATP-binding protein Regulator
  R5H38_RS08150 amiD 1582414..1583340 (-) 927 WP_274504946.1 oligopeptide ABC transporter permease OppC Regulator
  R5H38_RS08155 amiC 1583340..1584839 (-) 1500 WP_274504253.1 ABC transporter permease Regulator
  R5H38_RS08160 amiA 1584917..1586884 (-) 1968 WP_318150540.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 39545.42 Da        Isoelectric Point: 4.8911

>NTDB_id=899248 R5H38_RS08145 WP_274504252.1 1581340..1582404(-) (amiE) [Streptococcus parasuis strain 221006]
MAEKNNVILSAKDVVVEFEVRDRVLTAIRNVSIDFIEGEVLAIVGESGSGKSVLTKTFTGMLEENGRIASGSIIYRGEEL
TDIKKHEEWEKIRGAKIATIFQDPMTSLNPLVTIGRQITEVIIKHQGKSISEAKELAVNYMERVGIPDAKKRFNEYPFQY
SGGMRQRIVIAIALACRPDVLICDEPTTALDVTIQAQILDLLKELQKEYNFTTIFITHDLGVVASIADKVAVMYAGEVVE
FGTVEDIFYDPRHPYTWSLLSSLPQLANFNGELFSIPGTPPSLFTPVLGDAFASRSEFAMQVDFEESPPIFQVTENHWAK
TWLLHPEAPKATKPEVIQDLHSKIKSKMSVEDIK

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=899248 R5H38_RS08145 WP_274504252.1 1581340..1582404(-) (amiE) [Streptococcus parasuis strain 221006]
ATGGCAGAAAAAAACAATGTAATATTATCCGCAAAAGATGTGGTCGTGGAATTTGAAGTTCGTGACCGTGTTTTGACAGC
TATACGTAATGTCTCTATAGATTTTATCGAGGGAGAGGTTCTCGCAATTGTAGGGGAGTCTGGTTCTGGAAAGTCAGTTT
TGACAAAAACTTTCACAGGGATGCTGGAAGAGAATGGACGAATTGCTTCAGGAAGTATTATTTATCGTGGAGAAGAATTA
ACTGATATAAAAAAACATGAAGAATGGGAAAAAATACGTGGTGCAAAAATTGCAACTATTTTCCAGGATCCAATGACAAG
TCTTAATCCTTTGGTTACAATTGGCCGCCAAATTACCGAAGTTATCATTAAACATCAAGGAAAATCAATTTCTGAGGCAA
AAGAACTTGCGGTTAATTATATGGAACGAGTGGGTATTCCAGATGCAAAAAAACGTTTCAATGAATACCCGTTTCAATAT
TCAGGTGGTATGCGACAAAGAATTGTTATTGCAATTGCCTTAGCATGCCGTCCAGATGTATTAATTTGTGATGAACCAAC
AACAGCATTAGATGTAACAATACAAGCTCAAATTTTAGACTTATTAAAAGAATTACAAAAAGAATACAATTTTACAACAA
TTTTCATCACGCATGATTTGGGTGTTGTTGCAAGCATCGCTGACAAAGTTGCTGTTATGTATGCTGGCGAAGTTGTTGAA
TTTGGAACCGTAGAAGACATCTTTTATGACCCTCGACATCCATATACATGGAGTCTACTTTCAAGTCTTCCTCAGTTAGC
CAATTTTAATGGAGAACTCTTTTCAATTCCAGGAACACCTCCTTCACTTTTCACTCCGGTCTTAGGAGATGCATTTGCAT
CTCGTTCTGAATTCGCGATGCAGGTTGATTTTGAAGAATCTCCACCTATTTTTCAAGTTACAGAAAATCATTGGGCTAAA
ACTTGGTTATTACACCCTGAAGCTCCTAAAGCGACCAAACCAGAAGTGATTCAGGATTTACATTCAAAAATTAAATCTAA
GATGTCAGTAGAAGATATTAAATAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

77.937

98.588

0.768
  amiE Streptococcus thermophilus LMG 18311

77.65

98.588

0.766
  amiE Streptococcus thermophilus LMD-9

77.65

98.588

0.766
  oppD Streptococcus mutans UA159

56.047

95.763

0.537