Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   R5H38_RS08140 Genome accession   NZ_CP137602
Coordinates   1580407..1581330 (-) Length   307 a.a.
NCBI ID   WP_277837437.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 221006     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1575407..1586330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5H38_RS08125 mvk 1575697..1576632 (-) 936 WP_217374200.1 mevalonate kinase -
  R5H38_RS08130 - 1577339..1578607 (-) 1269 WP_318150539.1 MATE family efflux transporter -
  R5H38_RS08135 thrC 1578711..1580195 (-) 1485 WP_217374203.1 threonine synthase -
  R5H38_RS08140 amiF 1580407..1581330 (-) 924 WP_277837437.1 ATP-binding cassette domain-containing protein Regulator
  R5H38_RS08145 amiE 1581340..1582404 (-) 1065 WP_274504252.1 ABC transporter ATP-binding protein Regulator
  R5H38_RS08150 amiD 1582414..1583340 (-) 927 WP_274504946.1 oligopeptide ABC transporter permease OppC Regulator
  R5H38_RS08155 amiC 1583340..1584839 (-) 1500 WP_274504253.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34749.07 Da        Isoelectric Point: 7.2523

>NTDB_id=899247 R5H38_RS08140 WP_277837437.1 1580407..1581330(-) (amiF) [Streptococcus parasuis strain 221006]
MTEKLVEIKDLEISFGEGRKKFVAVKNANFFINRGETFSLVGESGSGKTTIGRAIIRLNETSGGDILYNGEKINGKISHE
KSRELIKKIQMIFQDPAASLNERATVDYIISEGLYNFKLFKNEEERQAKVRSMMTEVGLLAEHLTRFPHEFSGGQRQRIG
IARALVMNPELVIADEPISALDVSVRAQVLNLLKRLQKELGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFK
NPLHPYTRSLLSAVPIPDPILERQKTLIVYDPNMHDYSVDKPEMHEIKPGHFVWSNKAEFAKYSEGI

Nucleotide


Download         Length: 924 bp        

>NTDB_id=899247 R5H38_RS08140 WP_277837437.1 1580407..1581330(-) (amiF) [Streptococcus parasuis strain 221006]
ATGACTGAAAAATTAGTTGAAATCAAAGATTTAGAAATTTCTTTCGGTGAAGGGCGCAAAAAATTTGTAGCTGTCAAAAA
TGCTAATTTCTTTATTAATCGTGGAGAAACATTTTCCTTAGTTGGAGAATCGGGGTCTGGTAAGACAACGATTGGTCGTG
CGATAATTAGACTAAATGAAACAAGTGGTGGAGATATTCTTTATAATGGAGAGAAAATAAATGGGAAAATTTCTCATGAG
AAGTCTCGAGAATTAATTAAGAAAATTCAAATGATTTTTCAAGATCCAGCAGCGAGTTTGAATGAACGTGCAACAGTAGA
CTATATTATCTCTGAGGGCTTGTACAATTTTAAATTGTTTAAGAATGAAGAAGAGCGGCAAGCAAAAGTTCGGTCAATGA
TGACAGAAGTGGGGCTACTTGCGGAACACTTAACACGCTTTCCTCATGAGTTCTCAGGAGGCCAACGCCAGAGGATAGGT
ATAGCTCGAGCACTTGTGATGAATCCTGAATTGGTGATTGCCGATGAACCGATTTCTGCATTAGATGTGTCTGTTAGAGC
TCAAGTCTTAAATTTATTGAAGAGATTGCAAAAAGAACTGGGCTTAACTTATCTCTTTATTGCACATGATTTGTCAGTTG
TTCGGTTTATTTCTGATAGGATTGCAGTGATTCATAAAGGTGTTATTGTAGAAGTGGCAGAAACAGAGGAATTGTTTAAG
AATCCTTTGCATCCATACACTCGTTCCTTACTATCTGCTGTTCCTATTCCGGATCCAATTTTAGAAAGACAAAAAACTTT
AATAGTATATGATCCAAATATGCATGATTATTCTGTAGATAAGCCAGAAATGCATGAAATCAAGCCAGGTCATTTTGTAT
GGTCAAATAAAGCAGAATTTGCAAAATATTCAGAAGGCATATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

80.858

98.697

0.798
  amiF Streptococcus thermophilus LMD-9

80.528

98.697

0.795
  amiF Streptococcus salivarius strain HSISS4

80.198

98.697

0.792