Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   R5H38_RS08160 Genome accession   NZ_CP137602
Coordinates   1584917..1586884 (-) Length   655 a.a.
NCBI ID   WP_318150540.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 221006     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1579917..1591884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5H38_RS08140 amiF 1580407..1581330 (-) 924 WP_277837437.1 ATP-binding cassette domain-containing protein Regulator
  R5H38_RS08145 amiE 1581340..1582404 (-) 1065 WP_274504252.1 ABC transporter ATP-binding protein Regulator
  R5H38_RS08150 amiD 1582414..1583340 (-) 927 WP_274504946.1 oligopeptide ABC transporter permease OppC Regulator
  R5H38_RS08155 amiC 1583340..1584839 (-) 1500 WP_274504253.1 ABC transporter permease Regulator
  R5H38_RS08160 amiA 1584917..1586884 (-) 1968 WP_318150540.1 peptide ABC transporter substrate-binding protein Regulator
  R5H38_RS08165 pbp3 1587098..1588339 (+) 1242 WP_277837440.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  R5H38_RS08170 sufB 1588884..1590299 (-) 1416 WP_172036753.1 Fe-S cluster assembly protein SufB -
  R5H38_RS08175 sufU 1590717..1591157 (-) 441 WP_217374209.1 Fe-S cluster assembly sulfur transfer protein SufU -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72766.42 Da        Isoelectric Point: 4.2350

>NTDB_id=899251 R5H38_RS08160 WP_318150540.1 1584917..1586884(-) (amiA) [Streptococcus parasuis strain 221006]
MKRNKLFALAGITLLSASFLVACGSNSSSNSETSTTYSYVYTEDPTSLDYIAYNRAQISDIVTNMVDGLLENDKYGNLIP
SLAEDWKVSKDGLTYTYTLREGVKWYTAEGEEYADVTANDFVTAIKHAVDTQSEGLYIIQDSIAGLDDYVNGKTSDFETV
GVKALDDRTVQYTLSHPEPYWNSKLTMSIMLPVNAEFLESKGEDFGKVEPDGILYNGAYFISAMTSKSSLEYTKNENYWD
ADNVKIENVKLTYYDGQDPESLVRGFTDGIYSNARIYPNSSSYSSVKEQYADNITYSLQDATVYFTTLNLNRSNYGHTAK
TTDVQKESARKALLNKDFRQAFTFAFNRQDYLAQSVGEDAADKPLRNLLVPPTFVSAGEKSFGDLVSEKVISYGDEWADV
DFSDAQNGLYNVDKAKVEFEKAKQTLSSEGVEFPIHLDMPVNQSSEVSTQQAASLKQSVEAALGTENIVIDLQMMDTDTF
TNAAFYTETPDQNDYDITYSGWGPDYQDPSTYLDILETTSGAMTSKLGIDSSTTDVIKTVGLDKYDALLKEASDEKLDVV
KRYEKYAEAQAWLTDSAIVIPYMSLGGTPSVSKVIPYTASTSDVGIKGSGSFYKYMEVGTEVNKAKDVYAKREKWLKEKA
ESNAKAQEELANHVE

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=899251 R5H38_RS08160 WP_318150540.1 1584917..1586884(-) (amiA) [Streptococcus parasuis strain 221006]
ATGAAACGAAATAAATTGTTTGCATTAGCAGGTATTACTCTGCTGTCAGCCTCGTTCTTGGTTGCATGTGGTTCCAATTC
TAGCTCAAATTCTGAAACTAGTACAACTTATTCGTATGTTTATACTGAAGATCCAACTTCTTTAGATTACATTGCTTATA
ACCGTGCGCAAATTTCTGATATTGTTACTAATATGGTGGATGGTTTGTTAGAGAATGATAAGTACGGTAACTTAATCCCC
TCTCTTGCTGAAGATTGGAAGGTTTCAAAAGATGGTTTAACATATACTTATACTCTTCGTGAGGGCGTAAAATGGTATAC
AGCTGAAGGTGAAGAATATGCTGACGTGACAGCAAATGACTTTGTAACAGCTATTAAACATGCTGTGGATACACAGTCTG
AAGGTTTATATATTATCCAAGATTCAATTGCTGGTTTAGATGACTATGTTAACGGTAAAACAAGTGACTTTGAAACTGTT
GGTGTTAAGGCTTTAGATGACCGTACTGTTCAGTATACTTTGAGCCATCCAGAACCATATTGGAACTCAAAGTTAACCAT
GTCAATCATGTTGCCTGTAAATGCGGAATTTTTAGAATCAAAAGGTGAAGACTTTGGTAAAGTAGAGCCAGATGGAATTC
TTTACAATGGTGCATACTTTATTAGTGCAATGACATCTAAATCTTCACTTGAATATACAAAGAATGAAAACTACTGGGAT
GCCGACAATGTTAAAATTGAGAATGTTAAGTTAACATATTATGATGGGCAAGATCCAGAATCTTTGGTAAGGGGCTTCAC
GGATGGAATCTATTCTAATGCTCGAATATATCCAAATTCATCTAGCTATTCATCTGTTAAAGAACAATATGCTGATAACA
TTACTTATAGCCTTCAAGATGCAACAGTATATTTCACTACTTTGAACTTAAATCGTTCAAACTATGGTCATACTGCAAAA
ACAACAGATGTTCAGAAAGAATCAGCTAGAAAAGCATTATTAAATAAAGATTTTCGTCAAGCCTTTACTTTCGCATTTAA
CCGCCAAGATTACTTAGCACAATCAGTTGGTGAGGACGCTGCAGATAAGCCATTACGCAACTTGTTAGTTCCTCCTACTT
TTGTAAGTGCAGGCGAAAAATCATTTGGTGATTTAGTAAGTGAAAAAGTAATCTCATACGGAGATGAGTGGGCAGATGTA
GATTTCTCTGATGCTCAAAATGGGCTTTACAACGTTGATAAGGCAAAAGTTGAATTTGAAAAGGCAAAACAAACACTTTC
TTCTGAAGGAGTTGAATTCCCTATTCACTTAGATATGCCAGTTAACCAAAGTAGTGAGGTTAGTACACAACAAGCTGCTT
CATTGAAACAGTCTGTTGAAGCGGCATTAGGCACTGAAAATATTGTAATTGATCTTCAGATGATGGATACAGATACGTTT
ACAAACGCAGCTTTCTACACTGAAACACCCGATCAAAATGATTATGACATTACATACAGTGGATGGGGTCCTGACTACCA
AGATCCGTCTACCTACCTTGATATATTAGAAACAACATCTGGTGCGATGACTAGCAAGTTGGGTATTGATTCAAGTACGA
CTGATGTGATTAAAACAGTTGGGCTAGACAAATACGACGCGCTTCTTAAAGAAGCTTCTGATGAAAAACTTGATGTTGTA
AAACGATATGAAAAATATGCCGAAGCTCAAGCTTGGTTAACTGATAGCGCGATTGTAATCCCGTATATGTCATTAGGCGG
TACTCCTAGTGTATCTAAGGTTATTCCTTACACAGCATCTACGTCTGATGTTGGTATCAAAGGCAGTGGCTCATTCTACA
AATATATGGAAGTGGGCACTGAAGTAAACAAGGCAAAAGATGTTTACGCTAAGCGTGAAAAATGGTTAAAAGAAAAAGCT
GAGTCAAATGCTAAAGCTCAAGAAGAACTTGCTAACCATGTAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

54.476

100

0.548
  amiA3 Streptococcus thermophilus LMD-9

53.636

100

0.54
  amiA3 Streptococcus thermophilus LMG 18311

53.485

100

0.539