Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   R5H13_RS17420 Genome accession   NZ_CP137578
Coordinates   3891365..3892885 (-) Length   506 a.a.
NCBI ID   WP_130127104.1    Uniprot ID   A0A8I2KQK2
Organism   Pseudoalteromonas maricaloris strain DSM 15914     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3886365..3897885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5H13_RS17405 (R5H13_17405) - 3886655..3887782 (-) 1128 WP_010376613.1 hemolysin family protein -
  R5H13_RS17410 (R5H13_17410) - 3887949..3890402 (+) 2454 WP_130127103.1 S9 family peptidase -
  R5H13_RS17415 (R5H13_17415) - 3890628..3891323 (+) 696 WP_017219015.1 response regulator transcription factor -
  R5H13_RS17420 (R5H13_17420) comM 3891365..3892885 (-) 1521 WP_130127104.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  R5H13_RS17425 (R5H13_17425) - 3892903..3893517 (-) 615 WP_039492969.1 trimeric intracellular cation channel family protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54797.86 Da        Isoelectric Point: 8.0539

>NTDB_id=899203 R5H13_RS17420 WP_130127104.1 3891365..3892885(-) (comM) [Pseudoalteromonas maricaloris strain DSM 15914]
MSLARVFTRAQVGITAPEVIVEVHLSNGLPAFSIVGLPETSVKEAKERVRSALVNAGFLFPEQRITVNLAPADLPKDGGR
FDFAIALGVLVASGQLDSHAIADKEFYGELALNGELRTVTAILPSVIAAAKEGRTAYLPIGNDAVASLAADANRVAISCL
RTAWLGLSGQQSLRFNQLYPDNLNIEASGGSLLDMAEVKGQEGAKRVLEIAAAGGHNVLFLGPPGTGKSMLAQRLPTIMP
LMTDNQALETASIYSILGKTISQSNWKTRPFRAPHHTCSAVALVGGSSNPKPGEISLSNNGVLFLDELPEFDRKVLDSLR
EPMETGMVTISRAARQVDYPANFQLIAALNPSPTGCYTDKRASPDQVLRYLAKISGPFLDRIDLQVELPRLKTEELQSQH
DGESSATIRARVELAYKTALARQGKCNDQLSVKELNHICYLADAERLFLAKAAEKLKLSPRSYHRIIKVARTIADLSSTP
NIDLSHLKEALSYRALERLLAQLTQY

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=899203 R5H13_RS17420 WP_130127104.1 3891365..3892885(-) (comM) [Pseudoalteromonas maricaloris strain DSM 15914]
ATGTCTTTAGCAAGAGTCTTCACTCGAGCACAAGTTGGTATTACCGCACCCGAGGTAATTGTTGAGGTACACCTTAGTAA
TGGTTTACCTGCCTTTAGTATTGTTGGGTTACCCGAAACCTCAGTTAAAGAAGCCAAAGAGCGCGTTCGTAGTGCCCTTG
TTAATGCTGGCTTTTTATTTCCAGAACAGCGTATCACAGTAAACTTAGCACCAGCAGATTTACCCAAAGACGGTGGCCGC
TTTGACTTTGCAATCGCACTCGGTGTTCTCGTCGCATCAGGACAGTTAGATAGCCATGCTATTGCTGATAAAGAGTTTTA
TGGTGAGCTTGCGTTAAATGGTGAGCTGAGGACGGTCACTGCGATTTTGCCATCTGTTATTGCAGCAGCGAAGGAGGGGA
GAACTGCTTACTTACCAATTGGTAACGATGCAGTTGCGAGCCTCGCCGCTGATGCCAATCGTGTTGCTATAAGCTGCTTG
CGTACAGCATGGTTAGGCTTAAGCGGCCAGCAATCACTTAGGTTTAATCAACTCTACCCAGATAATTTAAATATTGAAGC
TTCAGGTGGGAGCTTGCTGGATATGGCTGAGGTGAAAGGACAAGAGGGAGCGAAGCGAGTGCTAGAAATAGCCGCGGCAG
GTGGGCATAACGTTTTATTTCTTGGTCCACCCGGCACTGGAAAATCGATGCTTGCTCAGCGTCTACCCACGATAATGCCA
CTAATGACGGATAATCAGGCGTTAGAAACGGCTTCTATCTATTCCATACTGGGAAAAACAATCAGCCAATCAAACTGGAA
AACAAGGCCTTTTAGAGCTCCACATCATACTTGCTCTGCGGTAGCCTTGGTTGGAGGCTCGTCGAACCCTAAGCCTGGGG
AGATATCATTGTCAAATAATGGTGTTCTATTTTTGGACGAGTTACCAGAATTTGATAGGAAGGTACTAGACTCATTACGT
GAGCCGATGGAAACGGGCATGGTAACGATTTCGCGCGCAGCTCGGCAAGTTGATTACCCTGCAAACTTTCAACTGATCGC
AGCATTAAATCCAAGTCCTACAGGTTGTTACACTGACAAAAGAGCGTCTCCAGATCAAGTATTGCGCTATTTGGCTAAGA
TTTCAGGTCCATTTTTAGACCGAATAGATCTACAAGTAGAATTACCTCGTCTAAAAACGGAAGAACTACAGTCACAGCAT
GATGGTGAGTCTAGCGCGACAATAAGGGCTAGGGTGGAGCTGGCCTATAAAACAGCTTTAGCACGTCAGGGAAAATGTAA
CGACCAACTGAGTGTAAAAGAGCTAAATCATATCTGCTATCTTGCTGATGCTGAACGTTTATTTCTAGCAAAGGCAGCAG
AAAAACTAAAGCTATCACCACGTTCATATCATCGAATAATCAAGGTTGCACGTACCATTGCAGATCTGAGTTCTACACCT
AATATTGACTTATCACATTTAAAGGAAGCGCTTAGTTATCGCGCGTTGGAGAGGTTGTTAGCTCAGTTAACACAGTATTA
G

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

53.649

100

0.538
  comM Haemophilus influenzae Rd KW20

53.649

100

0.538
  comM Glaesserella parasuis strain SC1401

52.849

100

0.532
  comM Vibrio cholerae strain A1552

52.86

100

0.53
  comM Legionella pneumophila str. Paris

50.398

99.209

0.5
  comM Legionella pneumophila strain ERS1305867

50.398

99.209

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.47

100

0.441