Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   R5M92_RS15000 Genome accession   NZ_CP137552
Coordinates   3265518..3267026 (+) Length   502 a.a.
NCBI ID   WP_346796769.1    Uniprot ID   -
Organism   Halomonas kashgarensis strain zp-37     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3260518..3272026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5M92_RS14990 (R5M92_14990) - 3262352..3263233 (+) 882 WP_346796767.1 ABC transporter substrate-binding protein -
  R5M92_RS14995 (R5M92_14995) - 3263262..3265283 (-) 2022 WP_346796768.1 TonB-dependent siderophore receptor -
  R5M92_RS15000 (R5M92_15000) comM 3265518..3267026 (+) 1509 WP_346796769.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  R5M92_RS15005 (R5M92_15005) - 3266926..3267972 (-) 1047 WP_346796770.1 alpha/beta hydrolase -
  R5M92_RS15010 (R5M92_15010) - 3268254..3268580 (-) 327 WP_346796771.1 hypothetical protein -
  R5M92_RS15015 (R5M92_15015) - 3268630..3269232 (-) 603 WP_346796772.1 NapC/NirT family cytochrome c -
  R5M92_RS15020 (R5M92_15020) - 3269241..3269741 (-) 501 WP_346796773.1 nitrate reductase cytochrome c-type subunit -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 53800.95 Da        Isoelectric Point: 7.7229

>NTDB_id=899025 R5M92_RS15000 WP_346796769.1 3265518..3267026(+) (comM) [Halomonas kashgarensis strain zp-37]
MTLAIVATRAGLGLEAPEVQVEVHLANGLPGLTLVGLPETAVKESRERVRSALVNAGFDFPNTRRITLNLAPADLPKEGG
RFDLPIALGILAASGQIPVEALEGVECTGELALDGKLRAVPGVLPFALATRQAGRALIVPRDCADEAALAGSLKVLPADT
LWQVVAHLLGQEKIPAHQLAFQPQPGQPPADLAEIRGQHQARRALEVAAAGGHNLLFAGPPGTGKTMLASRLPGILPPLS
DDEALEVAAVRSVCGLPLEQDWGRRPFRQPHHSASAAALVGGGSKPKPGEISLAHHGVLFLDELPEFSRHVLEVLRQPLE
SGTIHLARASHERRYPAQFQLVAAMNPCPCGHLGDPRQRCQCSTSQIQRYQARLSGPLLDRIDLQVEVPALPPEQLTSQE
VGESSAAVRQRVMAARERQLARGALNAYLGGRELEAACALQAAERTWLAEVLEKLKLSARAYHRVLRVALTLADLQGEAR
PAQPQLMEAIGYRQLDRLLKRG

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=899025 R5M92_RS15000 WP_346796769.1 3265518..3267026(+) (comM) [Halomonas kashgarensis strain zp-37]
ATGACGCTGGCTATCGTCGCCACCCGGGCCGGTCTGGGGCTCGAGGCGCCTGAAGTGCAAGTCGAAGTCCATCTGGCCAA
CGGCCTGCCCGGCTTGACGCTGGTGGGCCTGCCGGAAACGGCGGTGAAAGAGAGCCGCGAGCGGGTGCGCAGCGCCCTGG
TCAATGCCGGGTTCGATTTTCCCAATACACGGCGCATTACTCTTAACCTGGCCCCTGCCGACCTGCCCAAGGAGGGTGGG
CGTTTCGATCTGCCCATTGCCCTGGGGATTCTTGCCGCCTCGGGCCAGATTCCTGTGGAAGCGCTGGAAGGCGTGGAGTG
TACCGGCGAGCTGGCACTCGACGGCAAGCTGCGCGCGGTTCCCGGTGTATTGCCATTCGCCCTGGCTACTCGTCAGGCTG
GTCGCGCCTTGATCGTGCCTCGTGATTGCGCCGACGAGGCGGCACTGGCCGGCTCCCTGAAAGTCCTCCCCGCAGATACC
TTGTGGCAGGTGGTGGCCCACTTGCTGGGCCAGGAAAAGATTCCCGCCCACCAGTTGGCATTTCAACCGCAACCGGGGCA
GCCACCGGCGGATCTTGCCGAGATTCGCGGCCAGCACCAGGCTCGTCGGGCCCTGGAAGTCGCCGCCGCCGGCGGCCATA
ATCTCTTGTTTGCCGGCCCGCCCGGTACCGGCAAGACCATGCTCGCCAGCCGTCTACCGGGCATTCTTCCGCCGCTGAGC
GATGATGAAGCGCTGGAAGTGGCGGCGGTACGTTCGGTGTGCGGGCTACCGCTGGAGCAAGATTGGGGGCGGCGCCCCTT
TCGCCAGCCCCATCATAGTGCCAGCGCGGCAGCGCTGGTGGGTGGTGGCTCGAAGCCCAAGCCCGGCGAGATATCCCTGG
CCCACCACGGCGTGCTGTTTCTCGACGAGCTACCGGAATTTTCCCGCCACGTCCTCGAGGTACTTCGTCAGCCCCTGGAA
TCGGGAACCATTCACCTGGCGCGGGCCAGCCATGAACGCCGCTACCCCGCTCAATTCCAGTTGGTAGCGGCAATGAACCC
CTGTCCTTGCGGCCACCTGGGCGACCCGCGCCAACGCTGTCAATGCAGCACAAGCCAGATCCAGCGCTACCAGGCCCGGC
TTTCCGGTCCGCTGCTCGACCGCATCGACCTGCAGGTGGAGGTTCCCGCCTTGCCGCCCGAGCAGCTTACCTCCCAGGAG
GTGGGAGAAAGCTCGGCAGCGGTACGCCAGCGGGTGATGGCCGCCCGCGAGCGGCAATTGGCGCGCGGCGCCCTCAATGC
CTATCTCGGCGGCCGTGAATTGGAAGCCGCATGCGCCCTGCAAGCCGCCGAGCGCACATGGCTTGCCGAGGTGCTGGAAA
AACTCAAATTGTCGGCACGCGCCTACCACCGGGTACTGCGAGTGGCGCTCACGCTGGCGGATCTTCAGGGTGAGGCGCGC
CCCGCCCAGCCGCAGCTGATGGAGGCGATCGGCTATCGCCAACTGGATCGTTTGTTGAAGCGTGGCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

57.738

100

0.58
  comM Glaesserella parasuis strain SC1401

56.102

100

0.568
  comM Haemophilus influenzae Rd KW20

55.906

100

0.566
  comM Vibrio campbellii strain DS40M4

55.754

100

0.56
  comM Legionella pneumophila str. Paris

50.199

100

0.502
  comM Legionella pneumophila strain ERS1305867

50.199

100

0.502
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.39

99.203

0.47