Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   R5577_RS02160 Genome accession   NZ_CP137539
Coordinates   526992..528512 (-) Length   506 a.a.
NCBI ID   WP_277574346.1    Uniprot ID   -
Organism   Xanthomonas euvesicatoria strain T0319-01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 521992..533512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5577_RS02140 (R5577_02140) - 522616..523737 (+) 1122 WP_008574829.1 acyl-CoA desaturase -
  R5577_RS02145 (R5577_02145) - 523801..525363 (-) 1563 WP_031424639.1 EAL domain-containing protein -
  R5577_RS02150 (R5577_02150) - 525743..525919 (+) 177 WP_008574834.1 hypothetical protein -
  R5577_RS02155 (R5577_02155) - 526143..526652 (-) 510 WP_008574836.1 lipocalin family protein -
  R5577_RS02160 (R5577_02160) comM 526992..528512 (-) 1521 WP_277574346.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  R5577_RS02165 (R5577_02165) - 528528..528806 (-) 279 WP_008574840.1 accessory factor UbiK family protein -
  R5577_RS02170 (R5577_02170) - 528960..529334 (+) 375 WP_008574841.1 P-II family nitrogen regulator -
  R5577_RS02175 (R5577_02175) - 529811..531796 (+) 1986 WP_011348871.1 beta-N-acetylglucosaminidase domain-containing protein -
  R5577_RS02180 (R5577_02180) - 532000..532656 (-) 657 WP_014091297.1 RIO1 family regulatory kinase/ATPase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53934.69 Da        Isoelectric Point: 8.2739

>NTDB_id=898938 R5577_RS02160 WP_277574346.1 526992..528512(-) (comM) [Xanthomonas euvesicatoria strain T0319-01]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGVDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVEAFTARTL
LDVCATLNGSQKAPAAELAVQALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPGLLPEASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLSHNGVLFLDELPEWQRQTLEVLREPLE
SGVVTIARAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHVEVPRLPPQALRSGN
LGEDSACVRARVVAARQRQLARGALPNAQLDQADTDRHCRLQHDDQVLLERAIEHLQLSARSMHRILRVARTIADLDDSP
DIATRHLTEAIGYRKLDRALGTASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=898938 R5577_RS02160 WP_277574346.1 526992..528512(-) (comM) [Xanthomonas euvesicatoria strain T0319-01]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGGGTGCATGCGCCTGAGGTTCGGGTGGAAGTGCATCTCTCCGG
CGGTCTTCCTTCCACCCAGATCGTGGGCCTGCCCGAAGCGGCAGTGCGCGAATCGCGCGAACGCGTGCGTGCCGCCCTGC
TGTGCGCACAGTTCGAATTTCCCGCCCGGCGCATCACCATCAACCTGGCACCGGCCGATTTACCGAAAGAAGGCGGCCGG
TTCGATCTGCCGATCGCCCTCGGTATCCTGGCTGCCAGCGGGCAAATCGACCGCCAGGCCCTGGCCGATTACGAATTCCT
CGGCGAGCTTGCGCTGACCGGCGAGCTGCGCGGCGTCGACGGCGTGCTGCCCGCGGCGCTGGCGGCCGCGCAGGCCGGAC
GACGGCTGATCGTCCCGCTCGCCAACGGTGCCGAAGCGGCCATCGCCGGACACGTCGAAGCCTTCACCGCGCGTACCCTG
CTGGATGTCTGCGCCACGCTCAACGGCAGCCAGAAAGCGCCCGCCGCCGAGCTGGCAGTGCAGGCGCTCGGCGCCCGCGC
CCTGCCCGACATGGCCGACGTGCGCGGGCAACCGCACGCCCGCCGCGCGCTGGAGATCGCCGCTGCCGGTGGTCACCACC
TGTTGCTGGTCGGCAGCCCTGGCTGCGGCAAGACCCTGCTGGCCTCGCGCCTGCCCGGTCTATTGCCCGAAGCCAGCGAA
GCAGAAGCACTGGAAACCGCTGCGATCACCTCGATCAGCGGCCGTGGGCTGGATCTGGCCCGCTGGCGGCAACGCCCCTA
CCGCGCCCCGCACCACACCGCCAGCGCAGTGGCCCTGGTCGGCGGCGGCACGCACCCGCGCCCCGGCGAGATCTCGCTGT
CTCACAACGGCGTGCTGTTCCTGGACGAATTGCCCGAGTGGCAACGGCAAACCCTGGAAGTGTTGCGCGAGCCCTTGGAG
TCGGGCGTGGTCACGATCGCGCGCGCGGCACGCAGCGTGGATTTTCCGGCGCGCTTTCAATTGGTCGCCGCCATGAATCC
CTGCCCGTGCGGCTGGGCAGGCGATGGCAGCGGGCGCTGCCGCTGCAGCAGCGACAGCATCCGTCGCTACCGCAGCCGCA
TCTCCGGCCCGTTGCTGGACCGTATCGATCTGCATGTCGAAGTGCCGCGCCTCCCTCCGCAGGCGCTGCGCAGCGGCAAC
CTCGGTGAAGACAGCGCCTGCGTGCGTGCCCGCGTGGTCGCCGCGCGACAGCGACAGCTTGCACGCGGTGCGCTGCCCAA
TGCGCAACTGGACCAGGCCGACACCGACCGCCATTGCCGCCTGCAACACGACGATCAGGTGCTGCTGGAGCGCGCCATCG
AACACCTGCAACTGTCCGCACGCTCGATGCATCGCATCCTGCGCGTTGCGCGCACCATCGCCGATCTCGACGACAGCCCG
GACATCGCCACACGCCATCTCACCGAAGCGATCGGCTACCGCAAACTGGATCGTGCGCTTGGCACCGCCAGCGCGGCGTA
G

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.126

100

0.561
  comM Haemophilus influenzae Rd KW20

55.186

100

0.557
  comM Vibrio campbellii strain DS40M4

53.953

100

0.54
  comM Glaesserella parasuis strain SC1401

53.846

100

0.54
  comM Legionella pneumophila str. Paris

51.509

98.221

0.506
  comM Legionella pneumophila strain ERS1305867

51.509

98.221

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.276

100

0.455