NTDB

Overview

Name	comM	Type	Machinery gene
Locus tag	R5019_RS04445	Genome accession	NZ_CP137490
Coordinates	950838..952331 (+)	Length	497 a.a.
NCBI ID	WP_034013664.1	Uniprot ID	-
Organism	Pseudomonas aeruginosa strain HPA2017
Function	require for natural transformation (predicted from homology) Unclear

Genomic Context

Location: 945838..957331

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R5019_RS04415 (R5019_04415)	-	945972..946886 (-)	915	WP_003163071.1	fimbrial protein	-
R5019_RS04420 (R5019_04420)	sutA	947310..947627 (-)	318	WP_003098240.1	transcriptional regulator SutA	-
R5019_RS04425 (R5019_04425)	-	947705..948130 (-)	426	WP_003096441.1	secondary thiamine-phosphate synthase enzyme YjbQ	-
R5019_RS04430 (R5019_04430)	-	948391..949719 (-)	1329	WP_023092758.1	ammonium transporter	-
R5019_RS04435 (R5019_04435)	glnK	949759..950097 (-)	339	WP_003096476.1	P-II family nitrogen regulator	-
R5019_RS04440 (R5019_04440)	-	950537..950797 (+)	261	WP_003096478.1	accessory factor UbiK family protein	-
R5019_RS04445 (R5019_04445)	comM	950838..952331 (+)	1494	WP_034013664.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
R5019_RS04450 (R5019_04450)	betT	952456..954441 (+)	1986	WP_003096496.1	choline BCCT transporter BetT	-
R5019_RS04455 (R5019_04455)	pchP	954484..955533 (-)	1050	WP_003110458.1	phosphorylcholine phosphatase	-
R5019_RS04460 (R5019_04460)	-	955684..956601 (-)	918	WP_034013663.1	LysR substrate-binding domain-containing protein	-

Sequence

Protein

Download Length: 497 a.a. Molecular weight: 53125.01 Da Isoelectric Point: 7.7576

                                >NTDB_id=898338 R5019_RS04445 WP_034013664.1 950838..952331(+) (comM) [Pseudomonas aeruginosa strain HPA2017]

MSLAIVHSRAQVGVEAPCVSVEAHLANGLPSLTLVGLPETAVRESKDRVRSALLNAGFDFPARRITLNLAPADLPKDGGR

FDLAIALGILAASGQLPGTALDGLECLGELALSGAIRPVRGVLPAALAARDARRVLVVPKENAEEASLASGLTVFAVDHL

LEIAGHLSGQAPLPPYQARGLLRAPFPYPDLAEVQGQAAAKRALLVAAAGAHNLLLSGPPGTGKTLLASRLPGLLPALDE

DEALEVAAIHSVASHVPLRHWPQRPFRQPHHSASAPALVGGGSRPQPGEITLAHQGVLFLDELPEFERKVLEVLREPLES

GEIVIARANGRVRFPARFQLVAAMNPCPCGYLGDPSGRCRCTPEQVQRYRGKLSGPLLDRIDLHVSVLRESTSLQPEHGE

TATAEVSERVGAARQRQLARQGCANAHLDLQAMHRNCALAEADRRWLEAAGERLELSLRALHRILKVARTLADLERIDAI

ERRHLAEALQYRATTST

Nucleotide

Download Length: 1494 bp

                                >NTDB_id=898338 R5019_RS04445 WP_034013664.1 950838..952331(+) (comM) [Pseudomonas aeruginosa strain HPA2017]

ATGTCCCTGGCGATTGTCCACAGCCGAGCCCAGGTCGGCGTCGAAGCCCCCTGCGTCAGCGTCGAGGCGCACCTGGCCAA

CGGCCTGCCTTCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTGCGCGAGAGCAAGGACCGCGTGCGCAGCGCCCTGC

TCAATGCCGGTTTCGACTTCCCCGCGCGGCGCATCACCCTCAACCTCGCCCCCGCCGACCTACCCAAGGACGGCGGTCGC

TTCGACCTGGCCATCGCACTCGGCATCCTCGCCGCCAGCGGCCAGTTGCCCGGCACCGCCCTCGACGGCCTGGAGTGCCT

CGGCGAACTGGCCCTGTCCGGGGCGATCCGGCCAGTGCGAGGCGTATTGCCGGCCGCGCTGGCGGCGCGCGACGCAAGGC

GCGTTCTGGTGGTACCGAAGGAAAATGCCGAAGAGGCCAGCCTGGCCAGCGGGCTGACGGTGTTCGCCGTGGACCACCTG

CTGGAGATCGCCGGACACCTCTCCGGCCAGGCCCCGCTGCCGCCCTACCAGGCCCGCGGCCTGCTCCGCGCGCCCTTCCC

TTATCCAGACCTGGCCGAGGTCCAGGGCCAGGCCGCCGCCAAGCGCGCCCTGCTGGTGGCCGCCGCCGGCGCGCACAACC

TGTTGCTCAGCGGCCCGCCGGGCACCGGCAAGACCCTCCTGGCCAGCCGCCTGCCCGGCCTGCTGCCGGCGCTCGACGAG

GACGAAGCCCTGGAGGTCGCGGCGATCCATTCGGTGGCCAGCCACGTCCCCCTCAGGCACTGGCCGCAGCGACCGTTCCG

CCAGCCGCACCACTCCGCCTCCGCGCCGGCCCTGGTCGGCGGCGGCAGCCGCCCGCAGCCGGGCGAGATCACCCTGGCGC

ACCAGGGCGTACTGTTCCTCGACGAACTGCCGGAGTTCGAGCGCAAGGTCCTGGAGGTCCTGCGCGAGCCGCTGGAAAGC

GGCGAGATCGTCATTGCCCGGGCCAACGGCCGGGTACGTTTCCCGGCGCGCTTCCAACTGGTGGCGGCGATGAATCCCTG

TCCCTGCGGCTACCTGGGCGATCCCAGCGGCCGCTGCCGCTGCACCCCGGAACAGGTCCAGCGCTACCGGGGCAAGCTGT

CCGGACCGCTGCTCGATCGCATCGACCTGCACGTCAGCGTGCTCCGCGAAAGCACCAGCCTGCAGCCAGAACACGGCGAA

ACCGCTACTGCCGAGGTCAGCGAACGGGTTGGCGCCGCACGGCAACGGCAACTGGCCCGCCAGGGCTGCGCCAATGCCCA

TCTCGATCTCCAGGCGATGCACCGCAATTGTGCACTCGCCGAAGCGGACCGCCGCTGGCTGGAGGCTGCCGGAGAGCGCC

TGGAACTTTCCTTGCGCGCCTTGCATCGCATACTCAAGGTGGCCCGGACGCTGGCCGACCTGGAGCGCATCGATGCCATC

GAACGCCGGCACCTGGCGGAAGCCCTGCAGTATCGGGCAACGACCTCCACGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comM	Haemophilus influenzae Rd KW20	55.206	100	0.565
comM	Vibrio campbellii strain DS40M4	56.452	99.799	0.563
comM	Vibrio cholerae strain A1552	56.048	99.799	0.559
comM	Glaesserella parasuis strain SC1401	54.563	100	0.553
comM	Legionella pneumophila str. Paris	50.1	100	0.503
comM	Legionella pneumophila strain ERS1305867	50.1	100	0.503
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	45.957	100	0.469

Detailed information NTG0898338