Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   R5U37_RS08795 Genome accession   NZ_CP137476
Coordinates   1761291..1762973 (-) Length   560 a.a.
NCBI ID   WP_002326038.1    Uniprot ID   A0A6B3QBM1
Organism   Enterococcus faecium strain HMC8C-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1756291..1767973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5U37_RS08765 (R5U37_08785) ftsL 1757565..1757966 (-) 402 WP_002294542.1 cell division protein FtsL -
  R5U37_RS08770 (R5U37_08790) rsmH 1757971..1758930 (-) 960 WP_002297994.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  R5U37_RS08775 (R5U37_08795) mraZ 1758951..1759382 (-) 432 WP_002326039.1 division/cell wall cluster transcriptional repressor MraZ -
  R5U37_RS08780 (R5U37_08800) - 1759552..1759920 (-) 369 WP_002336924.1 DUF3397 domain-containing protein -
  R5U37_RS08785 (R5U37_08805) - 1760091..1761047 (+) 957 WP_002286649.1 magnesium transporter CorA family protein -
  R5U37_RS08790 (R5U37_08810) - 1761120..1761236 (+) 117 WP_002291876.1 DUF4044 domain-containing protein -
  R5U37_RS08795 (R5U37_08815) recN 1761291..1762973 (-) 1683 WP_002326038.1 DNA repair protein RecN Machinery gene
  R5U37_RS08800 (R5U37_08820) - 1762991..1763440 (-) 450 WP_002286653.1 arginine repressor -
  R5U37_RS08805 (R5U37_08825) - 1763547..1764365 (-) 819 WP_002326037.1 TlyA family RNA methyltransferase -
  R5U37_RS08810 (R5U37_08830) - 1764374..1765264 (-) 891 WP_002286656.1 polyprenyl synthetase family protein -
  R5U37_RS08815 (R5U37_08835) - 1765266..1765490 (-) 225 WP_002286657.1 exodeoxyribonuclease VII small subunit -
  R5U37_RS08820 (R5U37_08840) xseA 1765495..1766832 (-) 1338 WP_002346599.1 exodeoxyribonuclease VII large subunit -
  R5U37_RS08825 (R5U37_08845) - 1766833..1767687 (-) 855 WP_129171792.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 560 a.a.        Molecular weight: 63393.82 Da        Isoelectric Point: 4.6049

>NTDB_id=898197 R5U37_RS08795 WP_002326038.1 1761291..1762973(-) (recN) [Enterococcus faecium strain HMC8C-1]
MLQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRGSSDYIRQGAEKCVLEGLFELPKQEGFSELM
VELGIETDEDNLIVRRDMSLTGKNVCRVNGHIITLANLRRIGSYLVDIQGQNEHQELLQPESHLALLDRFGDVAFQQKKK
SYQQEYISYRELEKRVRKVQQNEKSYVQRIDMLHFQQEEIASADLQVGEEEKLKEEREKLSNYQKIADGLAAGYGALTNN
EQNSVDGVGLAVSELQGIAHLDVEYEAIYENIQSAYYLLQDAIGDMSRQIDLLELDESRLEEVTQRLELIRQLKRKYGES
IESILAYYDEITEELASSDFSEGQLDKMKEELEQKELLLQQQAADLHEARKKIAKELEKSILHELKSLYMENTEFEVRFL
KEENRQLNHDGFDQIEFYITTNPGEPLKPLVKVASGGELSRMLLALKTIFSSEQGVTSIIFDEVDTGVSGRVAQAIADKI
SQISKYSQVLCITHLPQVAAVADYQYYIVKAVIDGRTQTSVSELKTKEREEEIARMLAGSEITKLTLEHAKELLKLAKRT

Nucleotide


Download         Length: 1683 bp        

>NTDB_id=898197 R5U37_RS08795 WP_002326038.1 1761291..1762973(-) (recN) [Enterococcus faecium strain HMC8C-1]
ATGCTACAAGAAATCAGTATTACTAACTTTGCGATTATTCCCGAATTGCGGCTTTCTTTTCACGAAGGAATGACCGCGCT
GACCGGAGAGACTGGTGCGGGTAAATCCATTATTATCGATGCTTTAGGTCTGTTAGCAGGAGGAAGAGGTTCAAGCGATT
ATATACGTCAAGGAGCAGAAAAATGTGTGCTTGAAGGGTTGTTTGAACTACCAAAACAAGAAGGATTCTCTGAACTGATG
GTTGAATTAGGGATCGAAACAGATGAGGACAATCTGATTGTTCGACGGGATATGTCCTTAACTGGAAAAAATGTTTGTCG
AGTGAATGGTCATATCATCACATTAGCTAATTTAAGAAGAATCGGCAGTTATTTAGTAGATATCCAAGGACAAAACGAAC
ATCAGGAACTGCTCCAGCCTGAATCACATCTTGCTTTATTGGATCGTTTTGGAGATGTAGCTTTCCAACAGAAGAAAAAG
AGTTATCAGCAAGAATATATCTCTTATCGTGAGCTGGAAAAAAGGGTACGAAAAGTGCAGCAAAATGAAAAATCCTATGT
TCAGAGAATAGATATGCTCCATTTCCAGCAAGAAGAAATAGCTTCTGCTGATTTGCAAGTCGGAGAAGAAGAGAAATTAA
AAGAAGAAAGAGAAAAACTTAGCAATTATCAAAAAATTGCTGATGGATTAGCTGCAGGTTACGGAGCACTGACGAATAAT
GAACAAAACAGTGTAGATGGTGTTGGCTTGGCCGTTTCAGAACTGCAAGGGATCGCCCATCTAGATGTGGAGTATGAAGC
AATTTATGAAAATATCCAAAGTGCTTACTATTTGCTGCAAGATGCAATCGGCGATATGAGTCGTCAGATTGATTTATTGG
AGTTAGATGAGAGTCGTTTAGAAGAAGTGACGCAACGTTTAGAATTAATCCGACAGTTGAAACGTAAATACGGCGAATCC
ATTGAGTCAATATTGGCTTACTATGACGAAATCACCGAAGAGCTAGCTTCTTCTGATTTTTCAGAAGGTCAATTGGACAA
AATGAAAGAGGAACTAGAGCAAAAAGAGCTTCTACTTCAGCAACAAGCCGCAGATCTTCATGAAGCGCGTAAAAAAATCG
CAAAAGAATTGGAAAAATCCATTCTGCATGAATTGAAAAGTCTGTATATGGAAAACACTGAGTTTGAGGTACGTTTCTTA
AAAGAAGAAAATAGACAATTGAATCATGATGGATTTGACCAAATCGAATTTTACATTACGACCAATCCAGGAGAGCCACT
GAAGCCTTTGGTGAAAGTCGCTTCTGGTGGCGAACTGTCTCGGATGTTGCTTGCTTTGAAAACTATTTTTTCTTCTGAGC
AAGGTGTGACAAGTATTATTTTTGATGAAGTGGATACAGGTGTGAGCGGAAGAGTTGCACAAGCCATCGCAGATAAAATT
TCTCAAATATCGAAATACTCTCAAGTTTTGTGCATCACTCATCTGCCTCAAGTTGCTGCAGTCGCCGACTATCAATATTA
TATTGTGAAAGCAGTGATTGATGGACGTACGCAAACTTCTGTTTCAGAGTTGAAAACAAAAGAAAGAGAAGAAGAAATTG
CACGTATGCTGGCTGGAAGTGAGATTACAAAACTCACACTCGAACATGCAAAAGAACTATTGAAACTCGCAAAAAGGACC
TGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6B3QBM1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

49.298

100

0.502