Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   M2Z51_RS02460 Genome accession   NZ_AP024967
Coordinates   520058..520933 (-) Length   291 a.a.
NCBI ID   WP_248532071.1    Uniprot ID   -
Organism   Vibrio cholerae strain V130003     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 515058..525933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2Z51_RS02440 (V130003_04750) parC 515770..518055 (+) 2286 WP_000102507.1 DNA topoisomerase IV subunit A -
  M2Z51_RS02445 (V130003_04760) yacG 518342..518539 (-) 198 WP_000162863.1 DNA gyrase inhibitor YacG -
  M2Z51_RS02450 (V130003_04770) zapD 518681..519421 (-) 741 WP_000207194.1 cell division protein ZapD -
  M2Z51_RS02455 (V130003_04780) coaE 519453..520061 (-) 609 WP_248532070.1 dephospho-CoA kinase -
  M2Z51_RS02460 (V130003_04790) pilD 520058..520933 (-) 876 WP_248532071.1 A24 family peptidase Machinery gene
  M2Z51_RS02465 (V130003_04800) pilC 520991..522217 (-) 1227 WP_248532072.1 type II secretion system F family protein Machinery gene
  M2Z51_RS02470 (V130003_04810) pilB 522260..523948 (-) 1689 WP_153733690.1 type IV-A pilus assembly ATPase PilB Machinery gene
  M2Z51_RS02475 (V130003_04820) pilA 523953..524363 (-) 411 WP_148525586.1 pilin Machinery gene
  M2Z51_RS02480 (V130003_04830) nadC 524608..525498 (-) 891 WP_153733689.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32463.68 Da        Isoelectric Point: 6.6900

>NTDB_id=89785 M2Z51_RS02460 WP_248532071.1 520058..520933(-) (pilD) [Vibrio cholerae strain V130003]
MELFYFYPWLFPVLATLFGLIVGSFLNVVIYRLPKIMEREWRAECAASFPEYGITPPEGKLTLSLPRSTCPHCQTPIRVI
DNIPLLSWLALRGQCSHCKAPISARYPLIELLTALMSLEIATHFPFGVFAVALLFFSYVLIAATFIDFDTLLLPDQLTLP
LLWGGIALALLGFSPVSLSDAVIGAMAGYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPVIVLLSSVVGV
IFGLIQLRQQKKGIDMAFPFGPYLAIAGWFALLWGDKVIDWYFTTWVGQPL

Nucleotide


Download         Length: 876 bp        

>NTDB_id=89785 M2Z51_RS02460 WP_248532071.1 520058..520933(-) (pilD) [Vibrio cholerae strain V130003]
ATGGAACTGTTTTACTTCTACCCTTGGCTGTTTCCGGTGCTCGCCACGCTGTTTGGCTTGATTGTCGGTAGCTTTCTCAA
TGTGGTGATCTACCGCTTACCCAAAATCATGGAGCGTGAATGGCGCGCGGAATGTGCGGCAAGTTTTCCTGAATATGGCA
TCACGCCACCAGAGGGTAAACTGACCCTCAGTTTACCGCGTTCCACTTGCCCACACTGCCAAACGCCGATTCGCGTCATT
GATAATATCCCGCTACTGAGTTGGCTGGCGCTGCGCGGTCAATGCTCACACTGTAAAGCGCCGATCAGCGCTCGCTATCC
CTTGATTGAGCTACTCACTGCCCTCATGAGCTTAGAAATTGCCACTCACTTTCCGTTCGGAGTTTTTGCCGTGGCGCTGC
TGTTTTTCAGCTATGTATTGATTGCGGCAACCTTCATCGACTTCGATACCCTGTTGCTGCCCGACCAATTAACGCTACCT
TTACTGTGGGGCGGTATTGCACTGGCACTGCTTGGTTTTTCTCCGGTTTCACTGAGTGATGCGGTGATCGGAGCCATGGC
GGGTTATCTCTCGCTGTGGTCAATTTACTGGCTATTTAAACTGCTGACAGGTAAAGAAGGCATGGGTTATGGCGATTTCA
AATTGCTCGCCGCTCTCGGCGCTTGGCTGGGTTGGCAGCAGTTGCCTGTCATCGTACTGCTCTCATCGGTGGTCGGGGTG
ATTTTCGGTTTAATCCAACTGCGCCAGCAGAAAAAAGGTATTGATATGGCCTTTCCGTTTGGCCCTTATCTCGCCATCGC
GGGGTGGTTTGCCTTGCTGTGGGGCGATAAGGTAATTGATTGGTACTTCACCACTTGGGTAGGACAACCGCTATGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(135-244)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

99.656

100

0.997
  pilD Vibrio campbellii strain DS40M4

75.347

98.969

0.746
  pilD Acinetobacter nosocomialis M2

53.309

93.471

0.498
  pilD Acinetobacter baumannii D1279779

52.941

93.471

0.495
  pilD Neisseria gonorrhoeae MS11

44.792

98.969

0.443

Multiple sequence alignment