Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   M2Z51_RS00105 Genome accession   NZ_AP024967
Coordinates   24109..25632 (+) Length   507 a.a.
NCBI ID   WP_000521781.1    Uniprot ID   -
Organism   Vibrio cholerae strain V130003     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 19109..30632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2Z51_RS00090 (V130003_00190) ilvE 20682..21620 (-) 939 WP_000201999.1 branched-chain-amino-acid transaminase -
  M2Z51_RS00095 (V130003_00200) ilvM 21632..21916 (-) 285 WP_001190201.1 acetolactate synthase 2 small subunit -
  M2Z51_RS00100 (V130003_00210) ilvG 21928..23574 (-) 1647 WP_032477155.1 acetolactate synthase 2 catalytic subunit -
  M2Z51_RS00105 (V130003_00220) comM 24109..25632 (+) 1524 WP_000521781.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  M2Z51_RS00110 (V130003_00230) - 25722..26606 (+) 885 WP_032477157.1 acyltransferase -
  M2Z51_RS00115 (V130003_00240) - 26684..27286 (-) 603 WP_000732281.1 thiol:disulfide interchange protein DsbA/DsbL -
  M2Z51_RS00120 (V130003_00250) - 27317..28303 (-) 987 WP_032477158.1 serine/threonine protein kinase -
  M2Z51_RS00125 (V130003_00260) ccoG 28351..29775 (-) 1425 WP_032477159.1 cytochrome c oxidase accessory protein CcoG -
  M2Z51_RS00130 (V130003_00270) - 30165..30431 (-) 267 WP_000649654.1 YihD family protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55049.10 Da        Isoelectric Point: 8.3602

>NTDB_id=89775 M2Z51_RS00105 WP_000521781.1 24109..25632(+) (comM) [Vibrio cholerae strain V130003]
MGLAIIHSRASIGVQAPPVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASDQIARNKLESYEFIGELALSGEIRGVKGVLPAALAANQVERCLVVPHSNADQAALVGGERHKSAQSL
LEVCADLCGQQTLSLFQSSPSVQQVSQTRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASIASLTQQEINQHNWKLRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIVISRAQGKTRFPARFQLVGALNPSPTGYYEGSQARANPQSILRYLSRLSGPLLDRFDMSIEIPALPKGTLANGGDR
GESTAAVRQRVWVARERMLARSGKVNALLQSREIEQYCPLLKADAEFLESALHRLGLSIRAYHRIIKVARTIADLQGEAQ
IARPHLAEALGYRAMDRLLKQLSAQNV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=89775 M2Z51_RS00105 WP_000521781.1 24109..25632(+) (comM) [Vibrio cholerae strain V130003]
ATGGGACTTGCGATCATTCATAGCCGCGCCAGTATTGGCGTGCAGGCACCTCCGGTCACGGTTGAGGTTCACATCAGTAA
CGGGATGCCGGGGTTTACCTTGGTAGGATTGCCAGAAACTACAGTAAAAGAGTCGCGCGATCGGGTGCGCAGCGCGATCA
TCAATTCTCGCTTTGAGTTTCCAGCGAAGCGCATTACGGTCAATTTAGCCCCAGCCGATTTACCCAAAGAGGGGGGACGT
TTTGATTTGCCGATTGCACTTGGCATTTTGGCGGCCTCGGATCAAATTGCGCGAAATAAGCTCGAAAGTTACGAATTTAT
CGGCGAATTGGCGCTATCGGGCGAAATTCGTGGCGTGAAAGGGGTTTTGCCTGCCGCGCTCGCGGCTAACCAAGTGGAGC
GCTGTTTGGTGGTGCCGCACAGTAATGCCGATCAGGCGGCTTTGGTCGGGGGCGAGCGGCATAAGTCGGCGCAAAGCTTA
CTCGAAGTGTGCGCAGACTTGTGTGGTCAGCAAACTCTATCTTTGTTTCAAAGTTCGCCCAGTGTGCAACAAGTAAGTCA
GACGCGCGATCTGCAAGACATCATAGGTCAGCAGCAGGGAAAACGAGCTTTAGAAATCGCTGCGGCTGGCAATCACAACC
TATTGTTTCTCGGCCCTCCGGGAACAGGTAAAACCATGCTCGCTTCACGGCTGTGCGATTTACTGCCAGAAATGAGTGAT
GAAGAGGCAATGGAAACAGCTTCGATTGCCTCTCTTACGCAGCAAGAGATTAACCAACATAACTGGAAGTTACGCCCTTT
TCGTGCACCGCACCATTCAAGCTCAATGGCGGCTTTGGTCGGGGGCGGCACCATTCCGCGCCCCGGTGAAATTTCTCTCG
CCCATAATGGACTACTGTTTTTGGACGAAATGCCGGAGTTTGAGCGTAAAGTGCTGGATTCACTGCGTGAACCGCTGGAA
TCGGGTGAGATCGTGATTTCGCGCGCGCAGGGGAAAACCCGTTTTCCAGCACGCTTTCAATTGGTCGGCGCGTTAAATCC
AAGCCCCACGGGCTACTACGAAGGCAGTCAGGCGCGTGCCAATCCGCAGAGTATTTTGCGCTATTTGAGTCGGCTTTCGG
GCCCTTTGTTGGATCGCTTTGATATGTCGATTGAGATCCCAGCGTTACCCAAAGGTACGCTCGCCAATGGGGGCGATCGT
GGTGAATCGACGGCGGCTGTGCGCCAGCGAGTGTGGGTAGCGCGTGAGCGTATGTTGGCGCGATCGGGCAAAGTGAATGC
TTTGCTGCAAAGTCGAGAAATTGAACAGTATTGCCCTTTGCTTAAAGCGGATGCGGAATTTTTGGAAAGTGCGCTGCATC
GCTTGGGTTTATCGATTCGGGCTTACCATCGGATCATTAAAGTGGCGCGAACCATAGCGGATTTGCAAGGTGAAGCGCAG
ATCGCTCGTCCACATTTGGCCGAGGCGTTGGGCTATCGAGCCATGGATCGCTTACTCAAACAGCTCAGTGCGCAGAACGT
CTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

99.606

100

0.996
  comM Vibrio campbellii strain DS40M4

84.813

100

0.848
  comM Haemophilus influenzae Rd KW20

67.456

100

0.675
  comM Glaesserella parasuis strain SC1401

64.341

100

0.655
  comM Legionella pneumophila str. Paris

51.008

97.83

0.499
  comM Legionella pneumophila strain ERS1305867

51.008

97.83

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.11

100

0.432

Multiple sequence alignment