Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   R6H26_RS02120 Genome accession   NZ_CP137338
Coordinates   432171..432536 (-) Length   121 a.a.
NCBI ID   WP_404787918.1    Uniprot ID   -
Organism   Altericista sp. CCNU0014     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 427171..437536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6H26_RS02110 (R6H26_02095) - 428964..431471 (-) 2508 WP_404787915.1 methyl-accepting chemotaxis protein -
  R6H26_RS02115 (R6H26_02100) - 431605..432165 (-) 561 WP_404787916.1 chemotaxis protein CheW -
  R6H26_RS02120 (R6H26_02105) pilH 432171..432536 (-) 366 WP_404787918.1 PleD family two-component system response regulator Machinery gene
  R6H26_RS02125 (R6H26_02110) petN 433051..433140 (+) 90 WP_404787919.1 cytochrome b6-f complex subunit PetN -
  R6H26_RS02130 (R6H26_02115) - 433197..433343 (+) 147 WP_404787921.1 hypothetical protein -
  R6H26_RS02135 (R6H26_02120) argS 433347..435110 (+) 1764 WP_404787923.1 arginine--tRNA ligase -
  R6H26_RS02140 (R6H26_02125) - 435167..435778 (-) 612 WP_404787924.1 DNA-3-methyladenine glycosylase -
  R6H26_RS02145 (R6H26_02130) - 435775..436233 (-) 459 WP_404787926.1 heavy metal-responsive transcriptional regulator -
  R6H26_RS02150 (R6H26_02135) - 436252..436542 (-) 291 WP_404787927.1 hypothetical protein -
  R6H26_RS02155 (R6H26_02140) - 436606..436770 (-) 165 WP_404787929.1 hypothetical protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13757.18 Da        Isoelectric Point: 5.7091

>NTDB_id=897503 R6H26_RS02120 WP_404787918.1 432171..432536(-) (pilH) [Altericista sp. CCNU0014]
MVKVLIVDDSMTQRQLMSSVLEQIGLTVLIATDGVEAWEQIQQIQPDIVVLDIIMPRMNGYEVCRKIKTDPTIHHLPVVL
CSSKTEEFDRYWGMKQGADAYLAKPFQPKELLSTIQKLLKG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=897503 R6H26_RS02120 WP_404787918.1 432171..432536(-) (pilH) [Altericista sp. CCNU0014]
ATGGTTAAGGTGTTGATTGTTGATGATAGTATGACTCAGCGTCAACTGATGAGTAGCGTACTAGAACAAATTGGGCTGAC
GGTTTTAATCGCAACAGATGGCGTCGAAGCCTGGGAGCAAATCCAGCAGATACAGCCAGATATCGTTGTATTAGATATCA
TCATGCCTCGCATGAATGGATACGAAGTTTGCCGCAAAATCAAGACAGACCCTACTATCCATCACCTTCCTGTCGTCCTA
TGCTCTTCAAAAACAGAAGAATTCGATCGCTATTGGGGGATGAAGCAGGGTGCAGATGCATATCTAGCAAAACCCTTTCA
GCCTAAAGAGCTTTTGTCTACGATCCAAAAACTACTCAAAGGTTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

61.983

100

0.62
  pilG Acinetobacter baumannii strain A118

42.241

95.868

0.405
  chpA Acinetobacter baumannii strain A118

42.241

95.868

0.405
  pilL-C Synechocystis sp. PCC 6803

39.496

98.347

0.388
  micA Streptococcus pneumoniae Cp1015

36.667

99.174

0.364