Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   ABC806_RS04835 Genome accession   NZ_CP155539
Coordinates   921166..921714 (+) Length   182 a.a.
NCBI ID   WP_229294047.1    Uniprot ID   -
Organism   Streptococcus pneumoniae TIGR4     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 916166..926714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC806_RS04800 (ABC806_04795) - 917203..917814 (+) 612 WP_000251935.1 V-type ATP synthase subunit D -
  ABC806_RS04805 (ABC806_04800) - 918087..918272 (+) 186 WP_001136124.1 hypothetical protein -
  ABC806_RS04810 (ABC806_04805) tnpB 918253..918576 (+) 324 WP_000152337.1 IS66 family insertion sequence element accessory protein TnpB -
  ABC806_RS04815 (ABC806_04810) - 918731..919039 (-) 309 Protein_904 transposase -
  ABC806_RS04820 (ABC806_04815) - 919021..919458 (+) 438 Protein_905 IS66 family transposase -
  ABC806_RS04825 (ABC806_04820) - 919565..920223 (+) 659 Protein_906 IS66 family transposase -
  ABC806_RS04830 (ABC806_04825) - 920316..921119 (+) 804 Protein_907 IS5 family transposase -
  ABC806_RS04835 (ABC806_04830) comA/nlmT 921166..921714 (+) 549 WP_229294047.1 ATP-binding cassette domain-containing protein Regulator
  ABC806_RS04840 (ABC806_04835) - 921727..921897 (+) 171 WP_000711943.1 hypothetical protein -
  ABC806_RS04845 (ABC806_04840) gdhA 922403..923749 (-) 1347 WP_000199560.1 NADP-specific glutamate dehydrogenase -
  ABC806_RS04850 (ABC806_04845) - 924086..924837 (+) 752 Protein_911 transposase -
  ABC806_RS04855 (ABC806_04850) - 924834..925052 (+) 219 WP_000028150.1 hypothetical protein -
  ABC806_RS04860 (ABC806_04855) - 925109..925351 (-) 243 WP_000710764.1 type B 50S ribosomal protein L31 -
  ABC806_RS04865 (ABC806_04860) - 925447..926382 (-) 936 WP_000401779.1 bifunctional oligoribonuclease/PAP phosphatase NrnA -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20351.55 Da        Isoelectric Point: 7.2419

>NTDB_id=897414 ABC806_RS04835 WP_229294047.1 921166..921714(+) (comA/nlmT) [Streptococcus pneumoniae TIGR4]
MDTGKVLFDGVNINQIDKKILSQNLGVVPQDSFLLNRSILDNITLKHEVTSQKIEEVCKAVQIYDEIMAMPMKFNTIISE
MGSNISGGQRQRIALARALINNPSIVILDEATSALDTINEERITKYIQSQGCTQIIVAHRLSTIKDADVIFVMKGGKIVE
SGNHKYLMDLGGEYYSLYTKRK

Nucleotide


Download         Length: 549 bp        

>NTDB_id=897414 ABC806_RS04835 WP_229294047.1 921166..921714(+) (comA/nlmT) [Streptococcus pneumoniae TIGR4]
ATTGATACAGGAAAAGTTTTATTTGATGGTGTAAATATTAATCAAATAGATAAAAAAATATTAAGTCAAAATTTAGGAGT
AGTTCCACAGGATTCATTTTTATTGAACCGAAGTATTCTTGATAATATAACTTTAAAGCACGAAGTTACTTCACAAAAGA
TAGAGGAAGTTTGTAAAGCAGTTCAAATCTATGATGAAATCATGGCTATGCCGATGAAATTTAATACTATCATCTCAGAG
ATGGGGTCAAATATTTCAGGTGGGCAAAGGCAACGGATAGCACTGGCACGTGCATTAATAAATAATCCTAGTATTGTAAT
TTTAGATGAAGCAACTAGTGCATTAGACACTATTAATGAGGAAAGAATAACAAAGTATATACAAAGTCAGGGCTGTACTC
AAATAATTGTAGCTCATAGATTGTCAACGATTAAGGATGCGGATGTTATTTTTGTAATGAAAGGTGGTAAGATTGTTGAG
TCAGGAAATCATAAGTACTTAATGGATCTTGGTGGAGAGTACTACAGCTTATATACAAAAAGGAAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(2-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

42.778

98.901

0.423
  comA Streptococcus gordonii str. Challis substr. CH1

42.697

97.802

0.418
  comA Streptococcus mitis NCTC 12261

43.182

96.703

0.418
  comA Streptococcus mitis SK321

42.614

96.703

0.412
  comA Streptococcus pneumoniae R6

42.045

96.703

0.407
  comA Streptococcus pneumoniae Rx1

42.045

96.703

0.407
  comA Streptococcus pneumoniae D39

42.045

96.703

0.407
  comA Streptococcus pneumoniae TIGR4

40.909

96.703

0.396
  rcrQ Streptococcus mutans UA159

36.216

100

0.368