Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   R5O13_RS07765 Genome accession   NZ_CP137252
Coordinates   1755334..1756698 (-) Length   454 a.a.
NCBI ID   WP_159295756.1    Uniprot ID   -
Organism   Tenacibaculum maritimum strain CCCM 105     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1750334..1761698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5O13_RS07740 (R5O13_07730) - 1751136..1752002 (-) 867 WP_024742068.1 M23 family metallopeptidase -
  R5O13_RS07745 (R5O13_07735) - 1752373..1752735 (-) 363 WP_024742069.1 hypothetical protein -
  R5O13_RS07750 (R5O13_07740) - 1752761..1753303 (-) 543 WP_024742070.1 carboxymuconolactone decarboxylase family protein -
  R5O13_RS07755 (R5O13_07745) - 1753537..1754388 (-) 852 WP_024742071.1 helix-turn-helix domain-containing protein -
  R5O13_RS07760 (R5O13_07750) - 1754637..1755263 (+) 627 WP_024742072.1 DUF6973 domain-containing protein -
  R5O13_RS07765 (R5O13_07755) radA 1755334..1756698 (-) 1365 WP_159295756.1 DNA repair protein RadA Machinery gene
  R5O13_RS07770 (R5O13_07760) - 1756756..1759167 (-) 2412 WP_159295755.1 helix-turn-helix domain-containing protein -
  R5O13_RS07775 (R5O13_07765) - 1759224..1760177 (-) 954 WP_024742075.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  R5O13_RS07780 (R5O13_07770) panD 1760180..1760530 (-) 351 WP_024742076.1 aspartate 1-decarboxylase -
  R5O13_RS07785 (R5O13_07775) panC 1760560..1761420 (-) 861 WP_136439139.1 pantoate--beta-alanine ligase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49745.18 Da        Isoelectric Point: 6.7652

>NTDB_id=897266 R5O13_RS07765 WP_159295756.1 1755334..1756698(-) (radA) [Tenacibaculum maritimum strain CCCM 105]
MAKTKTTFFCQNCGTQHAKWVGQCGSCKEWNTIVEEVIQKEEKRNWKQSTTAKKNNTKPLLVNEIQLNPEERISTNNNEL
DTVLGGGLVKGSVTLLGGEPGIGKSTLLLQVALQISQKVLYVSGEESQSQIKMRAERLEEASNSNCLILTETNTQQIFKN
IEEVVPDVLVIDSIQTLHTNIIEASPGSISQIRETSAELIKFAKETATPVLLIGHINKEGHIAGPKILEHMVDVVLQFEG
DRNHTYRILRSQKNRFGSTAELGIYEMLSNGLREISNPSEILISKKDADLSGTAIASTLEGVRPLMIEIQALVSTAVYGT
PQRSTTGYNLKRLHMILAVLEKRAGFKLGAKDVFLNITGGIHVDDPAIDLAVVAAILSSNQDLAISPDVCFAAEVGLAGE
IRPVSKIDQRILEAEKLGYKTFVASKYNKITSKDHTIKLLLVGKIEEAFATLFA

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=897266 R5O13_RS07765 WP_159295756.1 1755334..1756698(-) (radA) [Tenacibaculum maritimum strain CCCM 105]
ATGGCTAAAACTAAAACAACCTTTTTTTGTCAAAATTGTGGAACCCAGCACGCAAAATGGGTGGGGCAATGTGGTTCTTG
TAAAGAATGGAATACTATTGTAGAAGAAGTTATTCAAAAAGAAGAAAAAAGGAACTGGAAGCAATCAACAACAGCAAAAA
AAAATAATACGAAACCGTTATTAGTTAATGAAATTCAACTAAATCCAGAAGAAAGAATATCAACAAATAATAATGAGTTA
GATACCGTTTTAGGAGGAGGTTTGGTAAAAGGATCTGTAACACTTTTAGGAGGTGAACCAGGTATTGGTAAGTCAACTTT
ACTGTTACAGGTAGCATTGCAAATTAGTCAAAAAGTTTTATACGTTTCAGGAGAAGAAAGCCAATCGCAAATAAAAATGC
GAGCAGAAAGGTTAGAAGAAGCAAGTAATTCCAATTGTTTAATTTTAACAGAGACGAATACGCAGCAAATTTTTAAAAAT
ATAGAAGAGGTAGTTCCAGATGTATTGGTAATAGACTCTATTCAAACATTACATACCAATATCATAGAAGCTTCTCCGGG
AAGTATTTCTCAAATTCGTGAAACCTCAGCAGAACTAATAAAATTTGCAAAAGAAACAGCAACGCCAGTATTGTTAATAG
GGCACATTAATAAGGAAGGTCATATTGCTGGTCCAAAAATATTGGAGCATATGGTAGATGTTGTTTTGCAGTTTGAAGGA
GACAGGAATCATACATATCGAATTTTGCGCTCGCAAAAAAATAGATTTGGATCTACTGCTGAGTTAGGTATTTACGAAAT
GTTATCTAATGGGCTTAGAGAAATTTCCAATCCATCAGAAATACTAATTTCTAAAAAAGATGCAGATTTAAGTGGTACGG
CAATTGCTTCTACACTGGAAGGAGTTCGACCGTTGATGATAGAAATTCAGGCATTGGTAAGCACTGCGGTATATGGAACC
CCACAAAGATCAACAACAGGGTACAATTTAAAGAGGCTTCACATGATTTTAGCAGTTTTAGAAAAACGAGCAGGGTTCAA
GTTAGGAGCAAAAGATGTCTTTTTAAATATTACAGGGGGGATTCATGTAGATGACCCCGCGATTGATCTTGCTGTTGTTG
CTGCAATTTTATCTTCAAATCAAGATCTAGCTATAAGTCCAGACGTATGCTTTGCAGCCGAAGTGGGATTGGCTGGAGAA
ATAAGGCCCGTGTCCAAAATAGATCAACGAATTTTAGAGGCTGAAAAACTTGGTTATAAAACTTTTGTAGCTTCTAAGTA
CAATAAGATTACTTCAAAAGATCATACAATAAAGTTACTATTGGTAGGAAAGATAGAGGAGGCTTTTGCTACATTATTTG
CTTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(332-428)

AAA domain (AAA_25)

(71-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

48.472

100

0.489
  radA Streptococcus pneumoniae R6

48.472

100

0.489
  radA Streptococcus pneumoniae TIGR4

48.472

100

0.489
  radA Streptococcus mitis NCTC 12261

48.472

100

0.489
  radA Streptococcus pneumoniae D39

48.472

100

0.489
  radA Streptococcus mitis SK321

48.253

100

0.487
  radA Bacillus subtilis subsp. subtilis str. 168

47.692

100

0.478