NTDB

Overview

Name	comA	Type	Regulator
Locus tag	ABC804_RS04920	Genome accession	NZ_CP155536
Coordinates	902086..902634 (+)	Length	182 a.a.
NCBI ID	WP_229294014.1	Uniprot ID	-
Organism	Streptococcus pneumoniae strain M264-3
Function	processing and transport of ComC (predicted from homology) Competence regulation

Genomic Context

Location: 897086..907634

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABC804_RS04885 (ABC804_04885)	-	898023..898160 (+)	138	WP_000807141.1	hypothetical protein	-
ABC804_RS04890 (ABC804_04890)	-	898954..899241 (+)	288	WP_000869751.1	hypothetical protein	-
ABC804_RS04895 (ABC804_04895)	-	899243..899695 (+)	453	Protein_913	hypothetical protein	-
ABC804_RS04900 (ABC804_04900)	-	900024..900581 (-)	558	WP_255296925.1	IS630 family transposase	-
ABC804_RS04905 (ABC804_04905)	-	900469..900735 (-)	267	WP_000215370.1	winged helix-turn-helix domain-containing protein	-
ABC804_RS04910 (ABC804_04910)	-	900826..900975 (-)	150	WP_001838451.1	hypothetical protein	-
ABC804_RS04915 (ABC804_04915)	-	901231..902039 (+)	809	Protein_917	IS5 family transposase	-
ABC804_RS04920 (ABC804_04920)	comA	902086..902634 (+)	549	WP_229294014.1	ATP-binding cassette domain-containing protein	Regulator
ABC804_RS04925 (ABC804_04925)	-	902647..902817 (+)	171	WP_000711943.1	hypothetical protein	-
ABC804_RS04930 (ABC804_04930)	gdhA	903313..904659 (-)	1347	WP_000199536.1	NADP-specific glutamate dehydrogenase	-
ABC804_RS04935 (ABC804_04935)	-	905072..905771 (+)	700	Protein_921	transposase	-
ABC804_RS04940 (ABC804_04940)	-	905768..905986 (+)	219	WP_000028151.1	hypothetical protein	-
ABC804_RS04945 (ABC804_04945)	-	906043..906285 (-)	243	WP_000710764.1	type B 50S ribosomal protein L31	-
ABC804_RS04950 (ABC804_04950)	-	906381..907316 (-)	936	WP_000401770.1	bifunctional oligoribonuclease/PAP phosphatase NrnA	-

Sequence

Protein

Download Length: 182 a.a. Molecular weight: 20317.58 Da Isoelectric Point: 7.8649

                                >NTDB_id=897183 ABC804_RS04920 WP_229294014.1 902086..902634(+) (comA) [Streptococcus pneumoniae strain M264-3]

MDTGKVLFDGVNINQIDKKILSQNLGVVPQDSFLLNRSILDNITLKHEVTSQKIEEVCKAVQIYDEIMAMPMKFNTIISE

MGSNISGGQRQRIALARALINNPSIVILDEATSALDTINEERITKYIKSQGCTQIIVAHRLSTIKDADIIVVMKGGKIVE

SGNHKYLMDLGGEYYSLYTKRK

Nucleotide

Download Length: 549 bp

                                >NTDB_id=897183 ABC804_RS04920 WP_229294014.1 902086..902634(+) (comA) [Streptococcus pneumoniae strain M264-3]

ATTGATACAGGAAAAGTTTTATTTGATGGTGTAAATATTAATCAAATAGATAAAAAAATATTAAGTCAAAATTTAGGAGT

AGTTCCACAGGATTCGTTTTTATTGAACAGAAGTATTCTTGATAACATAACTTTAAAGCACGAAGTTACTTCACAAAAGA

TAGAGGAAGTTTGTAAAGCAGTTCAAATCTATGATGAAATCATGGCTATGCCGATGAAATTTAATACTATCATCTCAGAG

ATGGGTTCAAATATTTCAGGTGGTCAAAGACAACGGATAGCACTGGCACGTGCATTAATAAATAATCCTAGTATTGTAAT

TTTAGATGAAGCAACTAGTGCTTTAGACACTATTAATGAGGAAAGAATAACAAAGTATATAAAAAGTCAGGGCTGTACTC

AAATAATTGTAGCTCATAGATTGTCAACGATTAAGGATGCGGATATTATTGTTGTAATGAAAGGTGGTAAGATTGTTGAG

TCAGGAAATCATAAGTACTTAATGGATCTTGGTGGAGAGTACTACAGCTTATATACAAAAAGGAAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(2-113)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comA	Streptococcus mitis NCTC 12261	43.75	96.703	0.423
comA	Streptococcus gordonii str. Challis substr. CH1	43.258	97.802	0.423
comA	Streptococcus mitis SK321	43.182	96.703	0.418
comA/nlmT	Streptococcus mutans UA159	42.222	98.901	0.418
comA	Streptococcus pneumoniae R6	42.614	96.703	0.412
comA	Streptococcus pneumoniae Rx1	42.614	96.703	0.412
comA	Streptococcus pneumoniae D39	42.614	96.703	0.412
comA	Streptococcus pneumoniae TIGR4	41.477	96.703	0.401
rcrQ	Streptococcus mutans UA159	36.216	100	0.368

Detailed information NTG0897183