Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ABC814_RS06710 Genome accession   NZ_CP155533
Coordinates   1306357..1306998 (-) Length   213 a.a.
NCBI ID   WP_000151482.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain Spn1439-106     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1301357..1311998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC814_RS06680 (ABC814_06675) - 1302316..1302558 (+) 243 WP_000710764.1 type B 50S ribosomal protein L31 -
  ABC814_RS06685 (ABC814_06680) - 1302615..1302833 (-) 219 WP_000028153.1 hypothetical protein -
  ABC814_RS06690 (ABC814_06685) - 1302830..1303708 (-) 879 Protein_1322 IS630 family transposase -
  ABC814_RS06695 (ABC814_06690) - 1303718..1303774 (-) 57 Protein_1323 hypothetical protein -
  ABC814_RS06700 (ABC814_06695) gdhA 1304322..1305668 (+) 1347 WP_000199560.1 NADP-specific glutamate dehydrogenase -
  ABC814_RS06705 (ABC814_06700) - 1306174..1306344 (-) 171 WP_000711943.1 hypothetical protein -
  ABC814_RS06710 (ABC814_06705) comA 1306357..1306998 (-) 642 WP_000151482.1 ATP-binding cassette domain-containing protein Regulator
  ABC814_RS06715 (ABC814_06710) - 1307123..1307310 (-) 188 Protein_1327 hypothetical protein -
  ABC814_RS06720 (ABC814_06715) - 1307271..1307867 (+) 597 WP_000547415.1 transposase -
  ABC814_RS06725 (ABC814_06720) - 1308017..1308211 (-) 195 Protein_1329 ROK family protein -
  ABC814_RS06730 (ABC814_06725) - 1308238..1309155 (-) 918 Protein_1330 dihydrodipicolinate synthase family protein -
  ABC814_RS06735 (ABC814_06730) - 1309187..1309594 (-) 408 WP_000216067.1 cytidine deaminase -
  ABC814_RS06740 (ABC814_06735) - 1309882..1310370 (-) 489 WP_000872894.1 phosphatidylglycerophosphatase A -
  ABC814_RS06745 (ABC814_06740) - 1310375..1311784 (-) 1410 WP_000773464.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23548.33 Da        Isoelectric Point: 9.2387

>NTDB_id=896813 ABC814_RS06710 WP_000151482.1 1306357..1306998(-) (comA) [Streptococcus pneumoniae strain Spn1439-106]
MTIESGQRIALVGQPGSGKSTLSKIPSGLYKIDTGKVLFDGVNINQIDKKILSQNLGVVPQDSFLLNRSILDNITLKHEV
TSQKIEEVCKAVQIYDEIMAMPMKFNTIISEMGSNISGGQRQRIALARALINNPSIVILDEATSALDTINEERITKYIKS
QGCTQIIVAHRLSTIKDADIIFVMKGGKIVESGNHKYLMELGGEYYSLYTKRK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=896813 ABC814_RS06710 WP_000151482.1 1306357..1306998(-) (comA) [Streptococcus pneumoniae strain Spn1439-106]
TTGACTATTGAGTCAGGACAGAGAATTGCACTAGTCGGTCAACCGGGGTCAGGAAAAAGTACATTATCAAAAATACCATC
AGGATTATATAAGATTGATACAGGAAAAGTTTTATTTGATGGTGTAAATATTAATCAAATAGATAAAAAAATATTAAGTC
AAAATTTAGGAGTAGTTCCACAGGATTCGTTTTTATTGAACCGAAGTATTCTTGATAATATAACTTTAAAGCACGAAGTT
ACTTCACAAAAGATAGAGGAAGTTTGTAAAGCAGTTCAAATCTATGATGAAATCATGGCTATGCCGATGAAATTTAATAC
TATAATCTCAGAGATGGGTTCAAATATTTCAGGTGGTCAAAGACAACGGATAGCACTGGCACGTGCATTAATAAATAATC
CTAGTATTGTAATTTTAGATGAAGCAACTAGTGCTTTAGACACTATTAATGAGGAAAGAATAACAAAGTATATAAAAAGT
CAGGGCTGTACTCAAATAATTGTAGCTCATAGATTGTCAACGATTAAGGATGCGGATATTATTTTTGTAATGAAAGGTGG
TAAGATTGTTGAGTCAGGAAATCATAAGTACTTAATGGAGCTTGGTGGAGAGTACTACAGCTTATATACAAAAAGGAAAT
GA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(1-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis NCTC 12261

42.857

98.592

0.423
  comA Streptococcus mitis SK321

42.381

98.592

0.418
  comA Streptococcus gordonii str. Challis substr. CH1

41.981

99.531

0.418
  comA/nlmT Streptococcus mutans UA159

41.981

99.531

0.418
  comA Streptococcus pneumoniae R6

41.429

98.592

0.408
  comA Streptococcus pneumoniae Rx1

41.429

98.592

0.408
  comA Streptococcus pneumoniae D39

41.429

98.592

0.408
  comA Streptococcus pneumoniae TIGR4

40.476

98.592

0.399
  rcrQ Streptococcus mutans UA159

36.62

100

0.366