Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   R2X24_RS15175 Genome accession   NZ_CP137170
Coordinates   3139747..3140361 (-) Length   204 a.a.
NCBI ID   WP_003831996.1    Uniprot ID   A0A5A9E513
Organism   Citrobacter portucalensis strain F621     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3134747..3145361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2X24_RS15160 (R2X24_15160) helD 3134971..3137025 (-) 2055 WP_149281423.1 DNA helicase IV -
  R2X24_RS15165 (R2X24_15165) - 3137151..3137597 (+) 447 WP_003831998.1 YccF domain-containing protein -
  R2X24_RS15170 (R2X24_15170) yccS 3137616..3139769 (+) 2154 WP_284968791.1 YccS family putative transporter -
  R2X24_RS15175 (R2X24_15175) sxy/tfoX 3139747..3140361 (-) 615 WP_003831996.1 TfoX/Sxy family DNA transformation protein Regulator
  R2X24_RS15180 (R2X24_15180) sulA 3140579..3141088 (+) 510 WP_008784287.1 SOS-induced cell division inhibitor SulA -
  R2X24_RS15185 (R2X24_15185) ompA 3141446..3142504 (+) 1059 WP_284968790.1 porin OmpA -
  R2X24_RS15190 (R2X24_15190) matP 3142593..3143045 (-) 453 WP_003831992.1 macrodomain Ter protein MatP -
  R2X24_RS15195 (R2X24_15195) - 3143231..3144991 (+) 1761 WP_284968789.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23168.54 Da        Isoelectric Point: 8.6049

>NTDB_id=896685 R2X24_RS15175 WP_003831996.1 3139747..3140361(-) (sxy/tfoX) [Citrobacter portucalensis strain F621]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=896685 R2X24_RS15175 WP_003831996.1 3139747..3140361(-) (sxy/tfoX) [Citrobacter portucalensis strain F621]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCTAATGGTGAGCTGTATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGCGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAGCTGGTGTCGTTATCGCGATATTCGTTGGATGCTGCGGT
TAAGGAGAAACAAAGTCGCTTTGCCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGCTGGAATTAAAGATGAGGGGACCATGCGATCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTTGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5A9E513

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

67.647

100

0.676