Detailed information NTG0896446

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: R4540_RS11155
• Genome accession: NZ_CP137135
• Coordinates: 2453513..2454520 (-)
• Length: 335 a.a.
• NCBI ID: WP_000224452.1
• Uniprot ID: A0A085RG68
• Organism: Vibrio cholerae V52
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2448513..2459520

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R4540_RS11130 (R4540_11125)	rraA	2449088..2449603 (-)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-
R4540_RS11135 (R4540_11130)	-	2449678..2450595 (-)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
R4540_RS11140 (R4540_11135)	hslU	2450699..2452030 (-)	1332	WP_001293366.1	HslU--HslV peptidase ATPase subunit	-
R4540_RS11145 (R4540_11140)	hslV	2452096..2452653 (-)	558	WP_000208249.1	ATP-dependent protease subunit HslV	-
R4540_RS11150 (R4540_11145)	-	2452790..2453341 (-)	552	WP_001884022.1	SPOR domain-containing protein	-
R4540_RS11155 (R4540_11150)	cytR	2453513..2454520 (-)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
R4540_RS11160 (R4540_11155)	priA	2454826..2457030 (-)	2205	WP_001247858.1	primosomal protein N'	-
R4540_RS11165 (R4540_11160)	rpmE	2457285..2457503 (+)	219	WP_000643446.1	50S ribosomal protein L31	-
R4540_RS11170 (R4540_11165)	-	2457811..2459088 (+)	1278	WP_001278588.1	malic enzyme-like NAD(P)-binding protein	-
R4540_RS11175 (R4540_11170)	metJ	2459199..2459516 (-)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=896446 R4540_RS11155 WP_000224452.1 2453513..2454520(-) (cytR) [Vibrio cholerae V52]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=896446 R4540_RS11155 WP_000224452.1 2453513..2454520(-) (cytR) [Vibrio cholerae V52]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCAGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGTTGCGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTTGAGCTGCTTCGCGGACACGATGTACGTGCTGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A085RG68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904