Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   R5L00_RS07985 Genome accession   NZ_CP137134
Coordinates   1795115..1796635 (-) Length   506 a.a.
NCBI ID   WP_317650515.1    Uniprot ID   A0AAU0KF37
Organism   Nitrosospira sp. Is2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1790115..1801635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5L00_RS07965 (R5L00_07965) - 1791188..1792072 (-) 885 WP_317650510.1 hypothetical protein -
  R5L00_RS07970 (R5L00_07970) - 1792356..1792859 (-) 504 WP_317650512.1 hypothetical protein -
  R5L00_RS07975 (R5L00_07975) - 1792856..1793293 (-) 438 WP_107694521.1 DUF5132 domain-containing protein -
  R5L00_RS07980 (R5L00_07980) - 1793833..1795038 (+) 1206 WP_181320599.1 DUF445 domain-containing protein -
  R5L00_RS07985 (R5L00_07985) comM 1795115..1796635 (-) 1521 WP_317650515.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  R5L00_RS07990 (R5L00_07990) - 1796753..1797055 (-) 303 WP_107694558.1 accessory factor UbiK family protein -
  R5L00_RS07995 (R5L00_07995) - 1797160..1798179 (+) 1020 WP_107694525.1 aminoglycoside phosphotransferase family protein -
  R5L00_RS08000 (R5L00_08000) murU 1798193..1798948 (+) 756 WP_258192704.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  R5L00_RS08005 (R5L00_08005) pepP 1799058..1800377 (+) 1320 WP_317650521.1 Xaa-Pro aminopeptidase -
  R5L00_RS08010 (R5L00_08010) - 1800374..1800760 (+) 387 WP_258192705.1 hypothetical protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54887.55 Da        Isoelectric Point: 8.2406

>NTDB_id=896404 R5L00_RS07985 WP_317650515.1 1795115..1796635(-) (comM) [Nitrosospira sp. Is2]
MPLAILYSRAISGMEAPLVTVEAHIANGLPSFTIVGLPEAEVKESKDRVRAALQNAQFEFPARRITVNLAPADLPKESGR
FDLPIALGILAATGQIPSDKLDQYEWAGELALTGELRAIRGALAMTYRAARSGRSFVLPRQNAAEAALVKEAVVYAATSL
LEICAHLAGREPMQRYLSQDGTERNSNTETGISPYPGMEEVKGQNHAKRALEIAAAGGHSLLMMGPPGTGKSMLAARFPG
ILPSMTEDEALESAAMQSLGSGGFNATNWKRRPYRAPHHTASGVALVGGGSNPRPGEISLAMNGVLFLDELPEFDRKVLE
VLREPLESGRITISRAARQADFPARFQLIAAMNPCPCGYLGHYSGKCRCNPDQVARYRGRISGPLLDRIDIQIEVPAASE
DDLMRQAHGDSSDTIRERVERAHQRQLARQGKTNAGLTVTDIDKYCVTDNAGESLLRQAISRLNLSARAYHRVLKVARTI
ADLAESDGIRSLHIAEAVQYRKLDKN

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=896404 R5L00_RS07985 WP_317650515.1 1795115..1796635(-) (comM) [Nitrosospira sp. Is2]
GTGCCGCTAGCGATTCTGTATAGCCGTGCTATTTCCGGCATGGAAGCTCCACTGGTCACAGTGGAAGCGCATATTGCCAA
TGGCCTGCCCAGCTTTACCATCGTGGGCCTGCCTGAAGCGGAAGTGAAGGAAAGCAAGGACCGGGTGCGTGCGGCGCTGC
AGAATGCGCAGTTTGAATTCCCCGCGCGCCGCATTACGGTCAACCTTGCCCCCGCCGACTTGCCCAAGGAGAGCGGGCGC
TTCGACCTGCCCATCGCGTTAGGCATTCTGGCAGCAACCGGGCAAATCCCTTCTGACAAGCTCGACCAATACGAATGGGC
TGGCGAACTCGCCCTGACGGGAGAACTGCGCGCGATACGCGGAGCGTTGGCGATGACGTACCGCGCAGCCCGCTCCGGGC
GCAGTTTCGTGCTCCCGCGGCAAAACGCCGCCGAGGCGGCGCTCGTCAAGGAAGCCGTGGTTTATGCGGCGACATCATTG
CTCGAGATTTGCGCCCACCTCGCCGGGCGTGAGCCGATGCAGCGCTATCTCAGCCAGGATGGGACGGAAAGAAATAGCAA
TACAGAGACGGGGATATCACCCTACCCCGGCATGGAAGAGGTCAAAGGACAGAATCATGCAAAACGTGCCCTTGAGATCG
CAGCGGCGGGCGGTCATAGCCTGTTAATGATGGGGCCGCCGGGCACCGGCAAATCCATGCTTGCCGCGCGTTTTCCCGGC
ATCCTGCCATCCATGACCGAAGATGAAGCGCTCGAATCGGCGGCCATGCAATCCCTGGGGAGCGGGGGTTTCAATGCGAC
TAACTGGAAACGCCGCCCTTACCGGGCGCCGCACCATACCGCTTCGGGCGTTGCCCTGGTGGGCGGCGGGAGCAATCCGC
GTCCCGGCGAAATTTCCCTGGCAATGAACGGTGTATTGTTCCTGGATGAGCTACCGGAATTTGACCGAAAAGTACTGGAA
GTATTACGCGAACCCCTCGAATCGGGGCGCATCACCATATCACGCGCGGCCCGTCAGGCCGACTTTCCCGCCCGGTTCCA
GTTGATTGCCGCCATGAATCCGTGCCCTTGCGGTTATCTCGGGCATTACAGCGGAAAGTGCCGTTGCAACCCCGATCAGG
TAGCGCGTTACCGGGGCAGGATCTCGGGCCCGCTGCTCGATCGCATCGACATCCAGATCGAAGTTCCCGCCGCGTCCGAG
GATGATTTAATGCGCCAGGCTCACGGCGACTCAAGCGACACGATCAGGGAACGGGTCGAGAGAGCACACCAGCGGCAACT
GGCACGACAAGGCAAAACCAACGCCGGGCTGACGGTGACGGACATCGATAAATACTGCGTGACGGATAACGCGGGGGAAA
GCCTGCTCAGGCAAGCCATCAGCCGGCTGAATCTCTCCGCCCGAGCCTATCATCGCGTCCTTAAAGTGGCGAGAACCATT
GCGGATCTGGCGGAAAGCGATGGCATCAGGAGTTTGCACATCGCGGAAGCGGTGCAATACCGCAAGCTGGATAAAAACTA
G

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-401)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(410-501)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.438

100

0.545
  comM Glaesserella parasuis strain SC1401

53.922

100

0.543
  comM Vibrio campbellii strain DS40M4

53.846

100

0.54
  comM Haemophilus influenzae Rd KW20

53.057

100

0.532
  comM Legionella pneumophila str. Paris

50.198

99.605

0.5
  comM Legionella pneumophila strain ERS1305867

50.198

99.605

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.686

100

0.46