Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R5L00_RS04090 Genome accession   NZ_CP137134
Coordinates   903701..904159 (-) Length   152 a.a.
NCBI ID   WP_317653491.1    Uniprot ID   A0AAU0KMN0
Organism   Nitrosospira sp. Is2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 898701..909159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5L00_RS04075 (R5L00_04075) cysM 899668..900555 (-) 888 WP_107692140.1 cysteine synthase CysM -
  R5L00_RS04080 (R5L00_04080) comE 900691..900984 (-) 294 WP_317653488.1 ComEA family DNA-binding protein Machinery gene
  R5L00_RS04085 (R5L00_04085) - 901888..903549 (-) 1662 WP_317653490.1 anti-phage dCTP deaminase -
  R5L00_RS04090 (R5L00_04090) ssb 903701..904159 (-) 459 WP_317653491.1 single-stranded DNA-binding protein Machinery gene
  R5L00_RS04095 (R5L00_04095) - 904159..905544 (-) 1386 WP_107692135.1 MFS transporter -
  R5L00_RS04100 (R5L00_04100) uvrA 905732..908569 (+) 2838 WP_317653493.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 16963.90 Da        Isoelectric Point: 5.3755

>NTDB_id=896399 R5L00_RS04090 WP_317653491.1 903701..904159(-) (ssb) [Nitrosospira sp. Is2]
MASVNKVILIGNLGKDPETRYMPNGDAVTNITLATTETWKDKNGEKQEKTEWHRVTFYRKLAEIAGEYLKKGRPVYVEGR
LETRKWTDKAGVERYTTDVIASDMKMLGTKPGSGSYEGGEREESSYAPSPSGSKAPARSSTNFDDMDDDIPF

Nucleotide


Download         Length: 459 bp        

>NTDB_id=896399 R5L00_RS04090 WP_317653491.1 903701..904159(-) (ssb) [Nitrosospira sp. Is2]
ATGGCATCAGTCAATAAGGTCATCCTCATCGGAAATCTCGGTAAAGACCCGGAGACCCGCTATATGCCGAATGGCGACGC
AGTGACCAATATCACCCTGGCCACGACCGAAACCTGGAAGGATAAAAACGGTGAGAAACAGGAAAAAACCGAGTGGCACC
GCGTCACTTTTTACCGCAAGCTGGCGGAAATCGCGGGTGAATACCTCAAGAAGGGCCGTCCGGTCTATGTAGAAGGAAGG
CTGGAAACGCGCAAATGGACCGACAAGGCAGGCGTCGAACGCTACACCACCGATGTCATTGCCAGCGACATGAAGATGCT
GGGCACCAAGCCCGGCAGCGGCAGCTATGAAGGCGGGGAGAGGGAAGAGAGCAGCTATGCGCCCAGCCCGTCCGGTAGCA
AGGCTCCAGCACGGAGCAGTACCAACTTCGATGATATGGACGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.282

100

0.586
  ssb Neisseria meningitidis MC58

49.711

100

0.566
  ssb Neisseria gonorrhoeae MS11

48.555

100

0.553
  ssb Glaesserella parasuis strain SC1401

42.778

100

0.507