Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   R5L00_RS04080 Genome accession   NZ_CP137134
Coordinates   900691..900984 (-) Length   97 a.a.
NCBI ID   WP_317653488.1    Uniprot ID   A0AAU0KMP3
Organism   Nitrosospira sp. Is2     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 895691..905984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5L00_RS04055 (R5L00_04055) - 896010..896783 (-) 774 WP_317653485.1 3'-5' exonuclease -
  R5L00_RS04060 (R5L00_04060) - 896832..897260 (-) 429 WP_317653486.1 YdbL family protein -
  R5L00_RS04065 (R5L00_04065) - 897272..897547 (-) 276 WP_107692142.1 hypothetical protein -
  R5L00_RS04070 (R5L00_04070) - 897713..899599 (-) 1887 WP_317653487.1 hypothetical protein -
  R5L00_RS04075 (R5L00_04075) cysM 899668..900555 (-) 888 WP_107692140.1 cysteine synthase CysM -
  R5L00_RS04080 (R5L00_04080) comE 900691..900984 (-) 294 WP_317653488.1 ComEA family DNA-binding protein Machinery gene
  R5L00_RS04085 (R5L00_04085) - 901888..903549 (-) 1662 WP_317653490.1 anti-phage dCTP deaminase -
  R5L00_RS04090 (R5L00_04090) ssb 903701..904159 (-) 459 WP_317653491.1 single-stranded DNA-binding protein Machinery gene
  R5L00_RS04095 (R5L00_04095) - 904159..905544 (-) 1386 WP_107692135.1 MFS transporter -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10269.08 Da        Isoelectric Point: 10.8769

>NTDB_id=896398 R5L00_RS04080 WP_317653488.1 900691..900984(-) (comE) [Nitrosospira sp. Is2]
MKKLFLIIVTLFALTGAAFGAVNINTATQAELESLQGIGPAKAKAIVDYRKKNGPFKSADDLQNVNGIGPATMKRLRKDV
TVGSTSAVKKDAKPPIK

Nucleotide


Download         Length: 294 bp        

>NTDB_id=896398 R5L00_RS04080 WP_317653488.1 900691..900984(-) (comE) [Nitrosospira sp. Is2]
ATGAAAAAACTGTTTCTGATTATCGTCACCTTGTTCGCACTTACCGGTGCAGCGTTCGGGGCGGTCAACATCAACACAGC
TACCCAGGCCGAACTGGAGTCATTGCAGGGAATTGGCCCGGCGAAAGCCAAGGCAATTGTCGATTATCGCAAGAAGAATG
GTCCTTTCAAATCGGCAGACGACTTGCAAAACGTCAATGGCATTGGCCCGGCGACTATGAAGCGGCTCCGCAAGGATGTG
ACCGTTGGGAGCACCTCTGCAGTCAAGAAGGACGCCAAGCCTCCCATCAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(21-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

54.255

96.907

0.526
  comE Neisseria gonorrhoeae MS11

54.255

96.907

0.526
  comE Neisseria gonorrhoeae MS11

54.255

96.907

0.526
  comE Neisseria gonorrhoeae MS11

54.255

96.907

0.526
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.878

84.536

0.464