Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LDN68_RS21300 Genome accession   NZ_AP024948
Coordinates   4528111..4529646 (+) Length   511 a.a.
NCBI ID   WP_223954817.1    Uniprot ID   -
Organism   Aeromonas caviae strain KAM345     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4523111..4534646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDN68_RS21285 (KAM345_041380) - 4524869..4525813 (-) 945 WP_039039680.1 branched-chain amino acid transaminase -
  LDN68_RS21290 (KAM345_041390) ilvM 4525826..4526083 (-) 258 WP_049636078.1 acetolactate synthase 2 small subunit -
  LDN68_RS21295 (KAM345_041400) ilvG 4526080..4527726 (-) 1647 WP_041211990.1 acetolactate synthase 2 catalytic subunit -
  LDN68_RS21300 (KAM345_041410) comM 4528111..4529646 (+) 1536 WP_223954817.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LDN68_RS21305 (KAM345_041420) - 4529779..4530678 (+) 900 WP_049636080.1 acyltransferase -
  LDN68_RS21310 (KAM345_041430) - 4530686..4531633 (+) 948 WP_223954818.1 acyltransferase -
  LDN68_RS21315 (KAM345_041440) - 4531579..4532064 (-) 486 WP_049636081.1 DUF523 domain-containing protein -
  LDN68_RS21320 (KAM345_041450) - 4532141..4532791 (-) 651 WP_049636082.1 NUDIX hydrolase -
  LDN68_RS21325 (KAM345_041460) - 4532866..4533501 (+) 636 WP_041214225.1 nicotinamidase -

Sequence

Protein


Download         Length: 511 a.a.        Molecular weight: 55344.40 Da        Isoelectric Point: 7.4701

>NTDB_id=89624 LDN68_RS21300 WP_223954817.1 4528111..4529646(+) (comM) [Aeromonas caviae strain KAM345]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPAKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPSVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAVTAWLAGQYELPLPEPQSAETLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGIL
PPLSEQEAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGTHPRPGEISLAHNGVLFLDELPEFERKVLDSL
REPLETGHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPRGSLT
GKVERGESSQQIRERVLGARERMLSRSGKLNNLLDSREIEDVCRLSPQDAEFLEGAIQKLGLSIRAWHRILRVSRTIADL
AGHATIERAHLIEALGYRAMDRLLSRLRGGQ

Nucleotide


Download         Length: 1536 bp        

>NTDB_id=89624 LDN68_RS21300 WP_223954817.1 4528111..4529646(+) (comM) [Aeromonas caviae strain KAM345]
ATGTCATTAGCTGTTGTTTATAGCCGTGCCAGCCTGGGGATAGCGGCGCCACAAGTCACGGTGGAGGTGCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTGGGGTTGCCGGAAACCTCGGTGAAGGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAATTTCCGGCCAAGCACATCACCGTCAACCTGGCACCTGCGGATCTGCCCAAGGAGGGGGGCCGC
TTCGACCTGGCCATCGCCATCGGCATTCTCGCCGCATCCAAGCAGATACCCGCAAAATACCTGCTAGACCACGAATTTTT
AGGGGAATTGGCCCTGACGGGCGAGATCCGCCCCGTGCTTGGGGTGCTCCCCTCGGTGCTCGCCTGCCGCGACGCGGGGC
GCACCCTGCTGGTCCCACGGGAGAACGGTCCGGAGGCTTCCCTCATACAGGATGCCGAGGTGCGCACCGCCCACCAGCTG
CTGGCGGTCACCGCCTGGCTGGCGGTCACCGCCTGGCTGGCGGGCCAGTACGAACTACCGCTGCCGGAACCCCAGAGCGC
GGAGACCCTGCCCGACGTGCCGGATCTACAGGACGTGATCGGTCAGTCCCAGGCGAAGCGGGCGCTGGAGATCGCCGCAG
CTGGCAGCCACAACCTGTTGTTCATCGGCCCCCCCGGCACCGGCAAGAGCATGTTGGCCAGCCGTCTGCCCGGCATTCTG
CCACCGCTGAGCGAACAGGAGGCGCAGCAGACCGCCGCCATTCACTCCATCGGCGGCCTCACCCCCCGCGCCGGCCACTG
GCACCACAGGCCGTATCGCACGCCCCATCACAGCGCCTCGGCGGTGGCGCTGGTGGGCGGGGGTACCCATCCCAGGCCTG
GCGAAATTTCCCTCGCCCACAACGGGGTACTGTTTCTGGATGAATTGCCGGAGTTCGAGCGCAAGGTGCTCGACTCCCTG
CGCGAGCCGCTGGAAACCGGGCACATTACCATCAGTCGCGCCGCCCGCCAGGTGGATTTTCCCGCCCGCTTCCAGCTGGT
GGGTGCCATGAATCCCAGCCCCTGCGGCCATTATGGCGACGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTATC
TGGGCAAGCTCTCCGGCCCCTTTCTCGATCGGTTCGATCTGACGGTAGAGGTCCCGCTCTTGCCCAGGGGGAGCCTGACC
GGCAAGGTGGAGCGGGGGGAATCGAGCCAGCAGATACGCGAACGGGTGCTGGGGGCGCGAGAGCGCATGCTGAGTCGCAG
CGGAAAACTCAACAACCTGCTGGATAGTCGTGAAATCGAAGATGTTTGCAGATTATCGCCACAGGATGCCGAGTTTCTGG
AAGGTGCCATCCAGAAGCTGGGGCTCAGCATCCGGGCCTGGCACCGCATCCTGCGGGTATCGCGCACCATCGCCGATCTG
GCGGGGCACGCCACCATCGAGAGAGCGCATCTGATCGAAGCCCTGGGCTATCGTGCCATGGATAGGCTGTTGTCGCGGCT
GCGCGGGGGCCAGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(195-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-498)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.189

99.413

0.628
  comM Haemophilus influenzae Rd KW20

61.133

100

0.613
  comM Vibrio campbellii strain DS40M4

61.417

99.413

0.611
  comM Glaesserella parasuis strain SC1401

60.117

100

0.605
  comM Legionella pneumophila str. Paris

50.196

99.804

0.501
  comM Legionella pneumophila strain ERS1305867

50.196

99.804

0.501
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.243

100

0.456

Multiple sequence alignment