Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   R4700_RS05695 Genome accession   NZ_CP137112
Coordinates   1106237..1106473 (+) Length   78 a.a.
NCBI ID   WP_000939546.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 02H2025     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1101237..1111473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4700_RS05685 - 1104307..1105153 (+) 847 Protein_1073 IS630 family transposase -
  R4700_RS05690 - 1105188..1105972 (-) 785 Protein_1074 transposase -
  R4700_RS05695 comW 1106237..1106473 (+) 237 WP_000939546.1 sigma(X)-activator ComW Regulator
  R4700_RS05700 - 1106704..1107990 (+) 1287 WP_001821607.1 adenylosuccinate synthase -
  R4700_RS05705 tadA 1108191..1108658 (+) 468 WP_000291872.1 tRNA adenosine(34) deaminase TadA -
  R4700_RS05715 - 1108844..1109287 (+) 444 WP_000701992.1 dUTP diphosphatase -
  R4700_RS05720 - 1109289..1109804 (+) 516 WP_179130506.1 histidine phosphatase family protein -
  R4700_RS05725 radA 1109818..1111179 (+) 1362 WP_073176637.1 DNA repair protein RadA Machinery gene

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 9686.14 Da        Isoelectric Point: 6.7051

>NTDB_id=896045 R4700_RS05695 WP_000939546.1 1106237..1106473(+) (comW) [Streptococcus pneumoniae strain 02H2025]
MLQKIYEQMANFYDSIEEEYGPTFGDNFDWEHVHFKFLIYYLVRYGIGCRRDFIVYHYRVAYRLYLEKLVMNRGFISC

Nucleotide


Download         Length: 237 bp        

>NTDB_id=896045 R4700_RS05695 WP_000939546.1 1106237..1106473(+) (comW) [Streptococcus pneumoniae strain 02H2025]
ATGTTACAAAAAATTTATGAGCAGATGGCTAATTTCTATGATAGTATTGAAGAAGAGTATGGTCCTACATTTGGTGATAA
TTTTGACTGGGAACATGTTCATTTTAAATTTTTAATTTATTATTTAGTGAGATATGGCATTGGTTGTCGTAGGGATTTTA
TCGTTTACCATTATCGTGTTGCTTATCGTTTGTATCTTGAAAAATTGGTAATGAATCGGGGTTTTATTTCTTGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus pneumoniae Rx1

98.718

100

0.987
  comW Streptococcus pneumoniae D39

98.718

100

0.987
  comW Streptococcus pneumoniae R6

98.718

100

0.987
  comW Streptococcus pneumoniae TIGR4

98.718

100

0.987
  comW Streptococcus mitis SK321

76.923

100

0.769
  comW Streptococcus mitis NCTC 12261

76.623

98.718

0.756