Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   R4702_RS00665 Genome accession   NZ_CP137106
Coordinates   138971..139924 (-) Length   317 a.a.
NCBI ID   WP_317810025.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 16P4028     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 133971..144924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4702_RS00640 - 134452..134547 (-) 96 Protein_128 IS630 family transposase -
  R4702_RS00645 - 134960..135301 (+) 342 Protein_129 transposase -
  R4702_RS00650 prsA 135418..136359 (-) 942 WP_000727935.1 peptidylprolyl isomerase PrsA -
  R4702_RS00655 - 136426..137139 (-) 714 WP_000230399.1 O-methyltransferase -
  R4702_RS00660 pepF 137141..138952 (-) 1812 WP_050205458.1 oligoendopeptidase F Regulator
  R4702_RS00665 coiA 138971..139924 (-) 954 WP_317810025.1 competence protein CoiA Machinery gene
  R4702_RS00670 tehB 139997..140857 (-) 861 WP_000413762.1 SAM-dependent methyltransferase TehB -
  R4702_RS00675 smpB 140873..141340 (-) 468 WP_001051750.1 SsrA-binding protein SmpB -
  R4702_RS00680 rnr 141303..143657 (-) 2355 WP_317810027.1 ribonuclease R -
  R4702_RS00685 secG 143759..143992 (-) 234 WP_000282517.1 preprotein translocase subunit SecG -
  R4702_RS00690 rpmG 144032..144181 (-) 150 WP_001809104.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 38259.91 Da        Isoelectric Point: 8.9865

>NTDB_id=895526 R4702_RS00665 WP_317810025.1 138971..139924(-) (coiA) [Streptococcus pneumoniae strain 16P4028]
MFVARDARGELVNVLEDKLEKQAYTCPACGGQLHLRQGPSVRTHFAHKSLKDCDFFFENESPEHLANKESLYHWLKKETK
VQLEYPLSELKQIADVFVNGNLALEVQCSPLLQKVLKERSEGYRSQGYQVLWLLGQKLWLKERLTRLQQGFLYFSQNMGF
YVWELDKEKQVLRLKYLIYQDLRGKLHYQIKEFSYGQGSLLEILRLPYKRQKISHFTVSEDKDICRYIRQQLYYQNLFWM
KEQAEAYQKGENILTYGLKEWYPQIRPIVGKFFQIEQDLTSYYQHFYTYYQKNPQNDWQKLYPPAFYQQYFLKNMVE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=895526 R4702_RS00665 WP_317810025.1 138971..139924(-) (coiA) [Streptococcus pneumoniae strain 16P4028]
ATGTTTGTTGCGAGAGATGCTAGGGGAGAATTGGTAAATGTGTTAGAGGATAAACTTGAGAAGCAAGCATACACCTGCCC
AGCTTGTGGAGGCCAGCTCCATTTGCGTCAAGGACCAAGTGTACGGACGCATTTTGCCCATAAATCCTTAAAAGACTGTG
ATTTTTTCTTTGAAAATGAAAGTCCAGAACACCTGGCCAATAAGGAATCCCTCTATCACTGGTTAAAAAAAGAGACAAAG
GTTCAATTAGAGTACCCGCTTTCAGAACTTAAACAGATTGCGGATGTATTTGTAAATGGCAATCTAGCTCTAGAAGTTCA
GTGTAGTCCCTTGCTTCAGAAAGTCCTTAAAGAGCGAAGTGAGGGATATCGTAGTCAGGGTTACCAAGTACTGTGGTTAC
TGGGTCAAAAACTGTGGCTCAAGGAGCGTTTGACTCGTCTACAGCAAGGTTTTCTTTATTTCAGTCAAAACATGGGCTTT
TATGTTTGGGAATTAGACAAGGAAAAACAAGTTTTAAGACTCAAATACCTGATTTACCAGGATCTCCGCGGTAAACTCCA
TTATCAAATCAAGGAATTTTCCTATGGTCAAGGTAGTTTATTGGAAATATTGCGTCTTCCCTATAAGAGACAAAAAATAT
CTCATTTTACAGTTTCTGAGGACAAGGACATCTGTCGCTATATCCGGCAACAACTTTATTATCAAAATCTCTTTTGGATG
AAAGAACAAGCAGAAGCCTATCAAAAGGGAGAAAATATCCTGACTTATGGACTGAAAGAATGGTATCCACAAATTCGACC
AATAGTGGGCAAATTTTTCCAGATTGAACAAGACTTGACTAGCTATTATCAGCACTTTTATACCTATTACCAAAAAAATC
CTCAAAATGATTGGCAAAAGCTTTATCCACCAGCCTTTTATCAGCAATATTTCTTGAAAAATATGGTAGAATAG

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(13-263)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

99.685

100

0.997
  coiA Streptococcus pneumoniae Rx1

99.054

100

0.991
  coiA Streptococcus pneumoniae D39

99.054

100

0.991
  coiA Streptococcus pneumoniae R6

99.054

100

0.991
  coiA Streptococcus mitis NCTC 12261

88.959

100

0.89
  coiA Lactococcus lactis subsp. cremoris KW2

42.593

100

0.435