Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   R4699_RS09385 Genome accession   NZ_CP137105
Coordinates   1859699..1860361 (+) Length   220 a.a.
NCBI ID   WP_050104879.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 16H2092     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1854699..1865361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4699_RS09365 tsf 1855341..1856381 (+) 1041 WP_000808063.1 translation elongation factor Ts -
  R4699_RS09370 cysK 1856502..1857428 (-) 927 WP_050104881.1 cysteine synthase A -
  R4699_RS09375 - 1857713..1858348 (-) 636 WP_000395739.1 YigZ family protein -
  R4699_RS09380 comFA/cflA 1858404..1859702 (+) 1299 WP_050104880.1 DEAD/DEAH box helicase Machinery gene
  R4699_RS09385 comFC/cflB 1859699..1860361 (+) 663 WP_050104879.1 ComF family protein Machinery gene
  R4699_RS09390 hpf 1860441..1860989 (+) 549 WP_000599107.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  R4699_RS09395 - 1861125..1863098 (+) 1974 WP_050104878.1 DHH family phosphoesterase -
  R4699_RS09400 rplI 1863095..1863547 (+) 453 WP_050082633.1 50S ribosomal protein L9 -
  R4699_RS09405 dnaB 1863590..1864942 (+) 1353 WP_050104877.1 replicative DNA helicase -
  R4699_RS09410 - 1864944..1865210 (+) 267 WP_001278167.1 Veg family protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25283.18 Da        Isoelectric Point: 6.8148

>NTDB_id=895505 R4699_RS09385 WP_050104879.1 1859699..1860361(+) (comFC/cflB) [Streptococcus pneumoniae strain 16H2092]
MKCLLCGQTMKTVLTFSSLLLLRNDDSCLCSDCDSTFERIGEENCPNCMKTELSIKCQDCQLWCKEGVEVSHRAIFTYNQ
AMKDFFSWYKFDGDFLLRKVFASFLSEELKKYKEYQFVVIPLSPDRYANRGFNQVEGLVEAAGFEYLDLLEKREERASSS
KNRSERLGTELPFFIKSGVTIPKKILLIDDIYTTGATINRVKKLLEEAGAKDVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=895505 R4699_RS09385 WP_050104879.1 1859699..1860361(+) (comFC/cflB) [Streptococcus pneumoniae strain 16H2092]
ATGAAGTGCTTGTTATGTGGGCAGACTATGAAGACTGTTTTAACTTTTAGTAGTCTCTTACTTCTGAGGAATGATGACTC
TTGTCTTTGTTCAGACTGTGATTCTACTTTTGAAAGAATTGGGGAAGAGAACTGTCCAAATTGTATGAAAACAGAGTTGT
CAATAAAGTGTCAAGATTGTCAACTTTGGTGTAAAGAGGGAGTTGAAGTCAGTCATAGAGCGATTTTTACTTACAATCAA
GCTATGAAGGATTTTTTCAGTTGGTATAAGTTTGATGGAGACTTCCTGTTAAGAAAAGTTTTCGCTTCATTTTTAAGTGA
GGAGTTGAAAAAGTACAAAGAGTATCAATTTGTTGTAATTCCCCTAAGTCCTGATAGATATGCTAATAGAGGATTTAATC
AGGTTGAGGGCTTGGTAGAGGCAGCAGGCTTTGAGTATCTGGATTTATTAGAGAAAAGAGAAGAGAGAGCCAGTTCTTCT
AAAAATCGTTCAGAGCGCTTGGGGACAGAACTTCCTTTCTTTATTAAAAGTGGAGTCACTATTCCTAAAAAAATCCTACT
TATAGATGATATCTATACTACAGGAGCAACTATAAATCGTGTTAAGAAACTGTTGGAAGAAGCTGGTGCTAAGGATGTAA
AAACATTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(153-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

99.091

100

0.991
  comFC/cflB Streptococcus pneumoniae Rx1

98.636

100

0.986
  comFC/cflB Streptococcus pneumoniae D39

98.636

100

0.986
  comFC/cflB Streptococcus pneumoniae R6

98.636

100

0.986
  comFC/cflB Streptococcus mitis NCTC 12261

91.364

100

0.914
  comFC/cflB Streptococcus mitis SK321

90.455

100

0.905