Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R4535_RS01375 Genome accession   NZ_CP137091
Coordinates   283587..284120 (+) Length   177 a.a.
NCBI ID   WP_000168287.1    Uniprot ID   A0A2A1YRC3
Organism   Vibrio cholerae strain DL4211     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 278587..289120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4535_RS01360 (R4535_01355) uvrA 278628..281450 (-) 2823 WP_071179834.1 excinuclease ABC subunit UvrA -
  R4535_RS01365 (R4535_01360) galU 281606..282478 (-) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  R4535_RS01370 (R4535_01365) qstR 282651..283295 (-) 645 WP_001188318.1 LuxR C-terminal-related transcriptional regulator Regulator
  R4535_RS01375 (R4535_01370) ssb 283587..284120 (+) 534 WP_000168287.1 single-stranded DNA-binding protein Machinery gene
  R4535_RS01380 (R4535_01375) csrD 284298..286256 (+) 1959 WP_000216146.1 RNase E specificity factor CsrD -
  R4535_RS01385 (R4535_01380) - 286269..287708 (+) 1440 WP_076025140.1 PilN domain-containing protein -
  R4535_RS01390 (R4535_01385) gspM 287705..288355 (+) 651 WP_000835144.1 type II secretion system protein GspM -
  R4535_RS01395 (R4535_01390) - 288348..288665 (+) 318 WP_000252812.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19644.85 Da        Isoelectric Point: 5.7626

>NTDB_id=894942 R4535_RS01375 WP_000168287.1 283587..284120(+) (ssb) [Vibrio cholerae strain DL4211]
MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRAQQGGMPAQGGMNAPAQQGSWGQPQQPAKQHQPMQQSAPQQYS
QPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=894942 R4535_RS01375 WP_000168287.1 283587..284120(+) (ssb) [Vibrio cholerae strain DL4211]
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACCATCGCGACCTCCGAAACCTGGCGTGATAAAGCCACAGGTGAACAGAAGGAAAAAACCG
AATGGCACCGAGTCACTCTGTATGGAAAATTGGCAGAAGTGGCCGGTGAATATTTGCGCAAAGGTTCTCAAGTTTACATT
GAAGGCCAACTGCAAACGCGTAAGTGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACCGAAGTGGTTGTACAAGGCTA
TAACGGTATCATGCAGATGCTGGGTGGACGTGCACAGCAAGGTGGAATGCCAGCCCAAGGCGGCATGAATGCTCCTGCGC
AGCAAGGTAGTTGGGGACAACCACAACAACCAGCGAAGCAGCATCAGCCTATGCAACAATCTGCGCCTCAACAGTACTCG
CAACCGCAGTATAATGAGCCGCCGATGGATTTTGATGACGACATCCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A1YRC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

99.435

100

0.994
  ssb Glaesserella parasuis strain SC1401

52.198

100

0.537
  ssb Neisseria meningitidis MC58

47.778

100

0.486
  ssb Neisseria gonorrhoeae MS11

47.778

100

0.486