Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   R4535_RS01370 Genome accession   NZ_CP137091
Coordinates   282651..283295 (-) Length   214 a.a.
NCBI ID   WP_001188318.1    Uniprot ID   A0A085QXE6
Organism   Vibrio cholerae strain DL4211     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 277651..288295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4535_RS01360 (R4535_01355) uvrA 278628..281450 (-) 2823 WP_071179834.1 excinuclease ABC subunit UvrA -
  R4535_RS01365 (R4535_01360) galU 281606..282478 (-) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  R4535_RS01370 (R4535_01365) qstR 282651..283295 (-) 645 WP_001188318.1 LuxR C-terminal-related transcriptional regulator Regulator
  R4535_RS01375 (R4535_01370) ssb 283587..284120 (+) 534 WP_000168287.1 single-stranded DNA-binding protein Machinery gene
  R4535_RS01380 (R4535_01375) csrD 284298..286256 (+) 1959 WP_000216146.1 RNase E specificity factor CsrD -
  R4535_RS01385 (R4535_01380) - 286269..287708 (+) 1440 WP_076025140.1 PilN domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24722.55 Da        Isoelectric Point: 9.6461

>NTDB_id=894941 R4535_RS01370 WP_001188318.1 282651..283295(-) (qstR) [Vibrio cholerae strain DL4211]
MQRANYARTIYLLTTQPKTLHPGVQAAIEQLNLPVPVIEPERLLREYQSDKHKILLLDHAENGLIRQQLGPLKLTSPYFE
TILFNVEKRLRTEDLLTFGNLKGLFYANEDTGFIAHGLGEIINGQNWLPRHVSSQLLHYYRYAFQSHQVQATVDLTAREI
QILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNLL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=894941 R4535_RS01370 WP_001188318.1 282651..283295(-) (qstR) [Vibrio cholerae strain DL4211]
ATGCAACGAGCCAACTATGCACGCACGATTTATTTATTAACGACACAGCCGAAAACGTTACATCCCGGAGTTCAAGCCGC
CATTGAGCAATTGAACCTGCCCGTCCCGGTGATTGAACCAGAACGCTTATTGCGCGAGTATCAATCCGATAAACACAAAA
TATTGTTGCTCGACCATGCGGAAAATGGCCTGATTCGCCAGCAATTGGGTCCCCTCAAGCTTACCAGCCCGTACTTCGAA
ACCATCTTGTTTAATGTCGAGAAACGGTTAAGAACGGAAGATCTGCTCACTTTTGGCAACCTCAAAGGTCTGTTTTATGC
CAATGAAGACACAGGCTTTATTGCCCACGGTCTTGGGGAGATCATTAATGGCCAAAACTGGCTACCTCGCCATGTCAGCA
GTCAGTTGCTGCATTACTATCGTTACGCTTTCCAAAGCCATCAAGTTCAAGCCACTGTCGATTTGACTGCACGTGAAATT
CAGATCCTGCGCTGTTTACAAACTGGCGCATCGAATATGCAAATCGCTGAGAATTTATTTATTAGTGAGTTCACGGTGAA
ATCGCATCTTTATCAGATATTTAAAAAGCTAAACGTGAAAAATCGAGTCAAAGCGATCGCTTGGGTTAATCAAAATTTAC
TGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085QXE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

98.598

100

0.986
  qstR Vibrio campbellii strain DS40M4

52.336

100

0.523
  qstR Vibrio parahaemolyticus RIMD 2210633

51.628

100

0.519