Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   R3L12_RS13800 Genome accession   NZ_CP137057
Coordinates   2946511..2947998 (-) Length   495 a.a.
NCBI ID   WP_149930928.1    Uniprot ID   -
Organism   Acinetobacter soli strain SNUBHAB0075     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2941511..2952998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3L12_RS13775 (R3L12_13755) - 2942129..2942515 (-) 387 WP_004932138.1 hypothetical protein -
  R3L12_RS13780 (R3L12_13760) - 2942625..2943023 (+) 399 WP_004932141.1 MAPEG family protein -
  R3L12_RS13785 (R3L12_13765) ppa 2943143..2943670 (+) 528 WP_004932145.1 inorganic diphosphatase -
  R3L12_RS13790 (R3L12_13770) - 2943762..2945039 (-) 1278 WP_149930930.1 OprD family porin -
  R3L12_RS13795 (R3L12_13775) - 2945655..2946467 (+) 813 WP_004932151.1 TorF family putative porin -
  R3L12_RS13800 (R3L12_13780) comM 2946511..2947998 (-) 1488 WP_149930928.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  R3L12_RS13805 (R3L12_13785) - 2948068..2948295 (-) 228 WP_111812617.1 accessory factor UbiK family protein -
  R3L12_RS13810 (R3L12_13790) glnK 2948570..2948908 (+) 339 WP_004281042.1 P-II family nitrogen regulator -
  R3L12_RS13815 (R3L12_13795) - 2948971..2950371 (+) 1401 WP_004944162.1 ammonium transporter -
  R3L12_RS13820 (R3L12_13800) nrdR 2950495..2950959 (+) 465 WP_004932226.1 transcriptional regulator NrdR -
  R3L12_RS13825 (R3L12_13805) ribD 2950966..2952054 (+) 1089 WP_171490510.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54171.28 Da        Isoelectric Point: 8.0999

>NTDB_id=894483 R3L12_RS13800 WP_149930928.1 2946511..2947998(-) (comM) [Acinetobacter soli strain SNUBHAB0075]
MSFAKILTRGVLGLHAPQIEVEVHLSQGLPSLTIVGLPEAAVRESKDRVRSAIINSGFQFPSKRLTINLAPADLPKDGSR
LDLPIALGILVASGQLPECCTNGYELVGELALDGHLRSVSSTLTIAIACQQAGHQLIAPQDNSLEIGQLPQFQAYAASHL
KQVCDHFQKIHPLDPVVLIQDHDLHHYPFDLADVKGQLRPRRALEIAAAGGHSLLFRGPPGTGKTLLASRLPSILPPLSA
QENLEVASIYSIANTRPPFGLRPFRAPHHTASAIALVGGGSNPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLEAKA
ITISRAARQISFPANFQLIAAMNPCPCGYAFNQDQRCQCTPEAIKRYQGRISGPLLDRIDLHIDVPPLQAHELQNTAPVE
DSASVRARVQKAYHYQIQRQQCLNQALSPKQLEAFAQLSPATEKIISLAQQKLNLSARAYHRVLRVARTIADLEQSPLIE
RHHLNEALSYRTDMS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=894483 R3L12_RS13800 WP_149930928.1 2946511..2947998(-) (comM) [Acinetobacter soli strain SNUBHAB0075]
ATGTCTTTTGCCAAAATTCTCACGCGAGGAGTTTTAGGGTTACACGCACCACAAATTGAAGTAGAAGTTCATTTAAGTCA
AGGGCTTCCATCACTTACCATCGTTGGTTTACCAGAGGCTGCCGTTCGCGAAAGTAAAGATCGGGTGCGCTCAGCCATTA
TCAACAGTGGCTTTCAGTTTCCCAGTAAACGCCTCACAATAAACCTTGCTCCAGCAGATTTGCCCAAAGATGGGTCACGT
TTAGACCTTCCCATTGCCTTGGGAATTTTGGTCGCATCTGGACAACTTCCCGAATGCTGCACCAATGGTTATGAGTTGGT
AGGCGAACTGGCTCTCGATGGCCATCTTCGTTCAGTCAGTAGCACATTGACCATTGCAATTGCCTGCCAGCAGGCAGGAC
ATCAACTCATTGCCCCGCAAGACAACAGTCTTGAAATTGGTCAGTTACCACAGTTTCAGGCCTATGCAGCCAGCCATTTA
AAACAGGTCTGTGATCACTTTCAAAAGATTCATCCGCTTGATCCAGTTGTATTGATACAAGATCACGATCTACATCACTA
CCCTTTTGATCTTGCCGATGTCAAAGGTCAGCTACGTCCTCGCCGCGCTCTTGAAATTGCGGCAGCTGGAGGACACTCAC
TCTTATTTAGAGGGCCACCGGGAACAGGTAAAACTTTGCTGGCGTCACGCTTACCCAGCATATTGCCACCACTGTCTGCC
CAAGAAAATCTAGAAGTGGCCAGCATCTATTCAATTGCAAATACCCGTCCTCCATTTGGTTTAAGGCCATTTCGAGCACC
GCATCATACTGCTTCAGCCATCGCTTTGGTGGGGGGTGGATCAAACCCAAAGCCCGGCGAAATCACGCTGTCGCATTTGG
GCGTACTCTTTTTGGATGAACTGCCCGAGTTTGATCGCAAGGTACTTGAAGTTTTAAGGCAGCCGCTAGAAGCCAAAGCC
ATCACGATTTCAAGAGCTGCACGTCAAATTTCATTTCCGGCCAATTTTCAATTGATCGCTGCAATGAATCCATGTCCGTG
CGGTTATGCCTTTAATCAGGATCAACGCTGTCAATGCACACCCGAAGCAATTAAGCGTTATCAAGGTCGAATTTCTGGCC
CGTTACTTGACCGTATCGATTTACATATTGATGTACCGCCACTTCAAGCACACGAACTACAAAATACGGCGCCTGTTGAA
GATTCAGCAAGTGTTCGCGCACGTGTGCAAAAGGCTTATCACTATCAGATCCAACGCCAGCAATGCTTAAATCAGGCGCT
ATCACCAAAACAGCTTGAAGCATTTGCTCAGCTTAGTCCTGCAACTGAAAAAATTATATCTTTGGCGCAGCAAAAACTCA
ATTTATCGGCTCGAGCTTATCATCGGGTACTGCGCGTGGCACGAACCATTGCAGATTTGGAGCAAAGTCCACTCATTGAG
CGGCACCATTTGAATGAAGCTTTATCGTATCGTACCGATATGAGCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Legionella pneumophila str. Paris

49.699

100

0.501
  comM Legionella pneumophila strain ERS1305867

49.699

100

0.501
  comM Vibrio campbellii strain DS40M4

49.899

100

0.499
  comM Glaesserella parasuis strain SC1401

49.098

100

0.495
  comM Haemophilus influenzae Rd KW20

48.497

100

0.489
  comM Vibrio cholerae strain A1552

48.283

100

0.483
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.527

100

0.463