Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   R3L13_RS11665 Genome accession   NZ_CP137055
Coordinates   2429846..2431333 (-) Length   495 a.a.
NCBI ID   WP_406626634.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain SNUBHAB0137     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2424846..2436333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3L13_RS11640 (R3L13_11660) - 2425534..2425704 (+) 171 WP_002009550.1 hypothetical protein -
  R3L13_RS11645 (R3L13_11665) - 2425761..2426573 (+) 813 WP_000975212.1 TorF family putative porin -
  R3L13_RS11650 (R3L13_11670) - 2426616..2427494 (-) 879 WP_109104370.1 dihydrodipicolinate synthase family protein -
  R3L13_RS11655 (R3L13_11675) - 2427510..2428286 (-) 777 WP_005135873.1 aldolase -
  R3L13_RS11660 (R3L13_11680) - 2428398..2429831 (+) 1434 WP_016654433.1 PLP-dependent aminotransferase family protein -
  R3L13_RS11665 (R3L13_11685) comM 2429846..2431333 (-) 1488 WP_406626634.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  R3L13_RS11670 (R3L13_11690) - 2431399..2431626 (-) 228 WP_000894500.1 accessory factor UbiK family protein -
  R3L13_RS11675 (R3L13_11695) glnK 2431906..2432244 (+) 339 WP_000780327.1 P-II family nitrogen regulator -
  R3L13_RS11680 (R3L13_11700) - 2432302..2433699 (+) 1398 WP_004737870.1 ammonium transporter -
  R3L13_RS11685 (R3L13_11705) nrdR 2433858..2434316 (+) 459 WP_000543541.1 transcriptional regulator NrdR -
  R3L13_RS11690 (R3L13_11710) ribD 2434332..2435417 (+) 1086 WP_001292499.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54496.39 Da        Isoelectric Point: 7.4014

>NTDB_id=894430 R3L13_RS11665 WP_406626634.1 2429846..2431333(-) (comM) [Acinetobacter baumannii strain SNUBHAB0137]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENCTEDFEFIGELALDGHVRPVSGALTLAMACQQAQHKIVLPVDNSQDISHLPNLECYPVNHL
KEVCEHFLGTQKLAHAQQSAYSNEMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLST
QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTTVRQRVIYAYEQQMQRQGCLNQALSPKQLEQHAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEVIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=894430 R3L13_RS11665 WP_406626634.1 2429846..2431333(-) (comM) [Acinetobacter baumannii strain SNUBHAB0137]
ATGTCTTTTTCTAAAATTTATACTCGGGGACTTTTAGGATTACATGCGCCTCTCATTGAGGTTGAGGTGCATGTGAGTCA
AGGCTTACCCTCTCTGACTATTGTAGGCTTAGCTGAAGCAGCCGTTAGGGAAAGTAAGGATAGGGTTCGCTCAGCTATTA
TTAACAGTGGATTTCAATTTCCAACTAAGCGGCTGACCATTAACCTTGCTCCTGCAGATTTGCCCAAAGATGGTTCACGG
CTAGATTTACCAATTGCTTTAGGCATCTTAATTGCCTCTGGTCAACTTCCGGAAAACTGCACAGAAGACTTTGAATTTAT
TGGAGAGTTAGCTCTAGACGGTCATGTAAGACCTGTGTCAGGCGCCTTAACTTTAGCAATGGCATGCCAGCAAGCTCAGC
ATAAAATCGTTTTACCAGTCGATAATAGCCAAGATATTAGCCATTTACCTAATCTTGAGTGTTATCCGGTTAACCATTTA
AAAGAGGTGTGCGAGCACTTTTTAGGCACACAAAAGCTAGCTCATGCGCAGCAAAGTGCCTATTCAAATGAAATGCCCTA
TAAATTTGATCTTGCAGATGTTAAAGGTCAGCTACGCCCACGGCGTGCACTAGAAATTGCTGCCGCTGGGGGACATTCCC
TGCTCTTTAAAGGACCACCAGGCACAGGTAAAACTTTATTGGCCTCACGCCTGCCTTCCATTTTACCGCCACTTTCTACT
CAAGAAACTCTTGAAGTTGCAAGTATTTATTCTATTTCAAATACACCACATACTTTTGGGCAGCGTCCATTTCGCGCGCC
CCACCATACAGCATCAGCAATTGCACTGGTTGGGGGCGGTTCACACCCTAAACCGGGTGAAATTACTTTATCTCATTTAG
GTGTTCTATTTTTAGATGAACTCCCCGAGTTTGACAGAAAAGTTCTAGAAGTCTTACGCCAACCGCTTGAGTCAAAAGAA
ATCATTATTTCACGAGCAGCTCGGCAAATTACCTACCCTGCAAACTTTCAGCTCATTGCAGCAATGAATCCTTGTCCATG
TGGGTATGCATTTAATCAAGATAGCCGTTGTCAGTGTTCACCAGAAAGCATTAAACGCTATCAAAACCGCATATCGGGAC
CGTTACTCGACCGCATCGATTTACATATTGATGTACCGCCATTAAAAGCTCAAGAACTGCAAGACCCAACGCCTGCAGAA
GATTCTACAACTGTGCGACAACGTGTGATTTATGCTTATGAACAACAAATGCAAAGACAGGGTTGTTTGAATCAGGCGCT
CTCACCAAAACAACTGGAACAACATGCCGTTCTCGATAGTACTTCACAACGAATGATTGAAATGGCTCAGCAACGTTTAA
ATTTATCTGCTCGTGCTTATCATCGCGTTTTACGGGTTGCTCGTACTATTGCCGATTTGGCTCAAAGTGAGGTCATTCAA
AGTCCTCATCTTACAGAAGCACTCTCTTATCGAGGTAATCACTCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.411

100

0.515
  comM Glaesserella parasuis strain SC1401

50.701

100

0.511
  comM Haemophilus influenzae Rd KW20

49.699

100

0.501
  comM Legionella pneumophila strain ERS1305867

49.301

100

0.499
  comM Legionella pneumophila str. Paris

49.301

100

0.499
  comM Vibrio campbellii strain DS40M4

48.687

100

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.2

100

0.467