Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   R2X36_RS20800 Genome accession   NZ_CP137009
Coordinates   4489189..4490706 (+) Length   505 a.a.
NCBI ID   WP_317841683.1    Uniprot ID   -
Organism   Aeromonas media strain QST31     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4484189..4495706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2X36_RS20785 (R2X36_20785) - 4485927..4486871 (-) 945 WP_317841681.1 branched-chain amino acid transaminase -
  R2X36_RS20790 (R2X36_20790) ilvM 4486884..4487162 (-) 279 WP_043128746.1 acetolactate synthase 2 small subunit -
  R2X36_RS20795 (R2X36_20795) ilvG 4487159..4488805 (-) 1647 WP_317841682.1 acetolactate synthase 2 catalytic subunit -
  R2X36_RS20800 (R2X36_20800) comM 4489189..4490706 (+) 1518 WP_317841683.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  R2X36_RS20805 (R2X36_20805) - 4490839..4491738 (+) 900 WP_317841684.1 acyltransferase -
  R2X36_RS20810 (R2X36_20810) - 4491748..4492695 (+) 948 WP_317841685.1 acyltransferase -
  R2X36_RS20815 (R2X36_20815) - 4492638..4493126 (-) 489 WP_317841686.1 DUF523 domain-containing protein -
  R2X36_RS20820 (R2X36_20820) - 4493235..4493885 (-) 651 WP_043128757.1 NrtR DNA-binding winged helix domain-containing protein -
  R2X36_RS20825 (R2X36_20825) - 4493960..4494595 (+) 636 WP_043128759.1 nicotinamidase -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 54844.79 Da        Isoelectric Point: 7.4700

>NTDB_id=894233 R2X36_RS20800 WP_317841683.1 4489189..4490706(+) (comM) [Aeromonas media strain QST31]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPEPQTTDTLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSRQIRERVLGARERMLSRNGKLNNLLDSREIEDICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGHPAI
EKEHLIEALGYRAMDRLLSRLRSGQ

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=894233 R2X36_RS20800 WP_317841683.1 4489189..4490706(+) (comM) [Aeromonas media strain QST31]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTGGGAATTGCGGCACCGCAAGTCACGGTGGAAGTCCATTTATCCAA
CGGACTGCCCGCCTTCAACATGGTGGGCCTGCCGGAAACCTCGGTGAAGGAGTCGCGGGACAGGGTGCGCAGCGCCCTGC
TCAACGGCAACTTCGAGTTCCCCTCCAAGCACATCACAGTCAACCTGGCCCCCGCCGATCTGCCCAAGGAGGGGGGCCGT
TTCGATCTGGCTATCGCCATCGGCATTCTCGCCGCTTCCAAGCAGATACCTGCAAAATACCTGCTCGATCACGAATTTTT
AGGGGAGCTGGCCCTGACCGGCGAGATCCGTCCCGTGCTCGGCGTGCTGCCCGCCGTGCTCGCTTGCCGCGACGCCGGGC
GTACCCTGCTGGTACCTCGGGAGAACGGCCCCGAGGCTTCCCTCATTCAGGACGCCGAAGTGCGTACCGCCCACCAGCTG
CTGGCCGTCACCGCTTGGCTGGCGGGCCAGTACGAGCTGCCCCTGCCGGAGCCCCAGACCACGGACACCCTGCCCGACGT
GCCGGATCTGCAGGATGTGATCGGCCAGTCCCAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATAGGTCCACCCGGCACCGGCAAGAGCATGCTGGCGAGCCGCTTGCCCGGCATACTGCCGCCGCTGAGCGAACAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACCCCCCGCGCCGGTCACTGGCATCACAGGCCCTATCG
CACGCCCCACCACAGCGCCTCAGCTGTGGCCTTGGTGGGGGGCGGCAGCCACCCGAGGCCAGGGGAAATCTCCCTGGCCC
ACAACGGAGTGCTGTTTCTCGACGAGCTCCCCGAATTTGAGCGCAAGGTGCTCGACTCCCTGCGAGAACCGCTGGAGACC
GGCCACATCACCATCAGCCGGGCCGCCCGCCAGGTGGACTTCCCCGCCCGCTTCCAGCTGGTGGGCGCCATGAACCCCAG
CCCCTGCGGCCACTACGGGGACGGCCAGACCCGCTCCAGCCCGGATCAGATACTGCGCTACCTCGGCAAGCTCTCGGGCC
CCTTTCTCGATCGCTTCGACCTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGCAGCTTGACCGGCAAGGCGGAGCGAGGG
GAGTCGAGCCGGCAGATCCGTGAGCGGGTGCTGGGCGCGCGGGAGCGCATGCTGAGCCGCAATGGCAAGCTCAACAATCT
GCTGGATAGTCGTGAGATAGAGGATATTTGCCGCTTATCACCGCAAGATGCCGAATTTTTGGAGAACGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCACCGTATCCTGCGGGTGTCGCGCACCATAGCGGATCTGGCGGGGCACCCCGCCATC
GAGAAGGAGCATCTGATCGAGGCGCTCGGCTACAGGGCCATGGACAGGCTGCTGTCACGGCTGCGCAGCGGCCAGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.147

99.406

0.628
  comM Vibrio campbellii strain DS40M4

62.351

99.406

0.62
  comM Haemophilus influenzae Rd KW20

61.66

100

0.618
  comM Glaesserella parasuis strain SC1401

60.158

100

0.604
  comM Legionella pneumophila str. Paris

50.992

99.802

0.509
  comM Legionella pneumophila strain ERS1305867

50.992

99.802

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.365

100

0.467