Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   R4823_RS27310 Genome accession   NZ_CP136998
Coordinates   5669739..5671274 (+) Length   511 a.a.
NCBI ID   WP_132980665.1    Uniprot ID   -
Organism   Pigmentiphaga sp. CHJ604     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5664739..5676274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4823_RS27285 - 5665433..5666083 (+) 651 WP_338616866.1 GntR family transcriptional regulator -
  R4823_RS27290 - 5666302..5667306 (+) 1005 WP_338616867.1 tripartite tricarboxylate transporter substrate binding protein -
  R4823_RS27295 - 5667339..5668109 (+) 771 WP_243724693.1 SDR family oxidoreductase -
  R4823_RS27300 - 5668119..5668964 (+) 846 WP_087836600.1 EamA family transporter -
  R4823_RS27305 - 5668969..5669622 (-) 654 WP_243724692.1 alpha/beta fold hydrolase -
  R4823_RS27310 comM 5669739..5671274 (+) 1536 WP_132980665.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  R4823_RS27315 - 5671445..5672572 (+) 1128 WP_338616869.1 GGDEF domain-containing protein -
  R4823_RS27320 - 5672587..5674275 (-) 1689 WP_243724699.1 GGDEF domain-containing protein -
  R4823_RS27325 - 5674547..5675044 (+) 498 WP_087836604.1 DinB family protein -
  R4823_RS27330 - 5675125..5675862 (+) 738 WP_087836605.1 FadR/GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 511 a.a.        Molecular weight: 53499.72 Da        Isoelectric Point: 9.3409

>NTDB_id=894139 R4823_RS27310 WP_132980665.1 5669739..5671274(+) (comM) [Pigmentiphaga sp. CHJ604]
MTLAVLASCALTGIDAPPVRVEVHLAPGLPSFTMVGLADTEVRESRERVRAALLSSGFDFPAGRLTVNLAPADLPKESGR
FDLPIAVGVLLASGQIAMPSLAGRVRARDAVPPLARLVLAGELSLTGALVPVAGALAIALSLSRRQPGAELLLPAGSAGQ
AARVPGLRVYGAATLRDVVAHLEEKQVLTATAGHADAAAGLPPCLSDVKGQYGARRALEVAAAGGHNLLMLGPPGSGKSM
LAQRLPGLLPPLRHDDALEAAAIASLAPGPAPPFGLRPFRAPHHSVSGAALVGGGTRPRPGEITFAHLGVLFLDELPEFG
RHVLDTLREPLETGRVSIARAQHRTDYPARFQLVAAMNPCRCGWHGSNVKACACTPDQVAAYRARLSGPLLDRIDLQVEV
PAAGDDWADLPPGEPTAAVRQRVETALDLQHRRQGCANAALAPGQVDAYCRPDAAARALWKQAMKQFAWSARTAHRVLKV
ARTVADLAGAAEIGSPHMAEAVQFRRPLRER

Nucleotide


Download         Length: 1536 bp        

>NTDB_id=894139 R4823_RS27310 WP_132980665.1 5669739..5671274(+) (comM) [Pigmentiphaga sp. CHJ604]
ATGACTCTTGCCGTCCTTGCCAGCTGCGCCCTGACCGGCATCGACGCGCCGCCGGTGCGCGTCGAGGTCCACCTGGCGCC
GGGCCTGCCTTCCTTCACCATGGTCGGCCTGGCCGATACCGAGGTGCGCGAAAGCCGCGAGCGCGTGCGTGCCGCGCTGC
TCAGTTCCGGCTTCGACTTCCCGGCGGGCCGGCTGACCGTCAACCTGGCGCCCGCCGACCTGCCCAAGGAATCCGGGCGC
TTCGACCTGCCCATCGCGGTGGGCGTGCTGCTGGCATCCGGGCAGATCGCCATGCCCTCGCTGGCCGGCCGCGTTCGCGC
GCGGGACGCCGTCCCGCCGCTGGCCCGGCTGGTGCTGGCCGGCGAACTGTCGCTGACCGGCGCGCTGGTGCCCGTCGCGG
GTGCCCTGGCCATTGCCCTGTCGTTGTCGCGGCGCCAGCCGGGCGCCGAACTGCTGCTGCCCGCCGGCAGCGCCGGACAG
GCGGCGCGGGTGCCGGGACTGCGGGTCTACGGCGCCGCCACGCTGCGCGATGTCGTGGCGCACCTGGAGGAAAAACAGGT
GCTGACCGCCACGGCCGGCCACGCCGATGCCGCCGCCGGCCTGCCGCCCTGCCTGTCCGACGTCAAGGGCCAGTACGGCG
CACGCCGGGCCCTGGAGGTCGCGGCGGCCGGCGGCCACAACCTGCTGATGCTGGGGCCGCCGGGTTCGGGCAAGAGCATG
CTCGCGCAGCGCCTGCCCGGCCTGCTCCCTCCGCTGCGGCATGACGACGCGCTGGAAGCCGCCGCCATCGCCAGTCTTGC
GCCCGGCCCCGCGCCCCCCTTCGGCCTGCGGCCGTTCCGCGCGCCGCACCATTCGGTATCGGGTGCCGCGCTGGTGGGCG
GAGGCACTCGGCCCCGGCCCGGGGAAATCACCTTCGCCCACCTGGGCGTGCTGTTCCTGGACGAACTGCCCGAGTTCGGC
CGGCACGTGCTCGATACCCTGCGCGAACCGCTGGAAACCGGCCGCGTCTCCATCGCACGCGCCCAGCACCGCACCGACTA
TCCGGCGCGCTTCCAGCTGGTGGCCGCGATGAACCCCTGCCGGTGCGGCTGGCACGGCAGCAACGTGAAGGCCTGCGCCT
GCACGCCCGACCAGGTGGCCGCCTACCGGGCACGGCTGTCCGGCCCGCTGCTCGATCGCATCGATCTCCAGGTCGAGGTC
CCCGCCGCCGGCGACGACTGGGCCGACCTGCCTCCCGGCGAACCCACCGCCGCCGTGCGCCAGCGAGTCGAGACCGCCCT
GGACCTGCAGCATCGCCGGCAGGGCTGCGCCAACGCGGCCCTCGCACCGGGGCAGGTCGACGCCTACTGCCGTCCCGATG
CCGCCGCCCGAGCCTTGTGGAAACAGGCCATGAAGCAGTTCGCGTGGTCGGCGCGCACGGCGCACCGGGTATTGAAGGTG
GCGCGGACGGTGGCAGACCTGGCGGGCGCGGCCGAGATCGGCAGCCCGCACATGGCCGAGGCGGTGCAGTTCCGACGGCC
ATTGAGGGAACGATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-155)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(205-402)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(413-505)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

48.924

100

0.489
  comM Vibrio campbellii strain DS40M4

46.771

100

0.468
  comM Glaesserella parasuis strain SC1401

45.736

100

0.462
  comM Haemophilus influenzae Rd KW20

45.279

100

0.46
  comM Legionella pneumophila str. Paris

42.829

100

0.432
  comM Legionella pneumophila strain ERS1305867

42.829

100

0.432
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.779

100

0.423