Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R4823_RS03755 Genome accession   NZ_CP136998
Coordinates   746723..747235 (+) Length   170 a.a.
NCBI ID   WP_087837527.1    Uniprot ID   -
Organism   Pigmentiphaga sp. CHJ604     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 741723..752235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4823_RS03745 uvrA 742056..744962 (-) 2907 WP_087837525.1 excinuclease ABC subunit UvrA -
  R4823_RS03750 - 745348..746562 (+) 1215 WP_338617497.1 MFS transporter -
  R4823_RS03755 ssb 746723..747235 (+) 513 WP_087837527.1 single-stranded DNA-binding protein Machinery gene
  R4823_RS03760 - 747255..747653 (+) 399 WP_087837528.1 VOC family protein -
  R4823_RS03765 - 747710..747922 (-) 213 WP_087837529.1 hypothetical protein -
  R4823_RS03770 crcB 747942..748325 (-) 384 WP_132979078.1 fluoride efflux transporter CrcB -
  R4823_RS03775 - 748426..749913 (+) 1488 WP_087837531.1 AMP nucleosidase -
  R4823_RS03780 - 749974..751548 (+) 1575 WP_338617502.1 EAL domain-containing protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18178.95 Da        Isoelectric Point: 5.9622

>NTDB_id=894127 R4823_RS03755 WP_087837527.1 746723..747235(+) (ssb) [Pigmentiphaga sp. CHJ604]
MASVNKVILVGNLGRDPEVRYTPDGAAICNVSIATTSQWKDKNSGERREETEWHRVVFYNRLAEIAGEYLKKGRSVYVEG
RLKTRKWQDKDTGADKYTTEIVADQMQMLGGREGGGGGGEGGYGGGGGYGDSAPAQRPSNRPASGGGGQRPASQSSSAPN
FADMDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=894127 R4823_RS03755 WP_087837527.1 746723..747235(+) (ssb) [Pigmentiphaga sp. CHJ604]
ATGGCATCCGTCAACAAAGTCATCCTGGTCGGCAACCTGGGCCGCGACCCCGAAGTTCGCTACACGCCCGACGGCGCAGC
GATCTGCAACGTGTCCATCGCCACCACGTCCCAATGGAAGGACAAGAACTCGGGCGAACGCCGCGAGGAAACCGAGTGGC
ACCGCGTGGTGTTCTACAACCGCCTGGCCGAGATCGCCGGCGAATACCTGAAGAAGGGCCGTTCGGTGTATGTCGAAGGC
CGCCTGAAGACCCGCAAGTGGCAGGACAAGGACACCGGCGCCGACAAGTACACGACCGAGATCGTCGCCGACCAGATGCA
GATGCTGGGCGGCCGTGAAGGCGGTGGCGGCGGTGGCGAAGGCGGCTACGGCGGTGGCGGCGGCTATGGTGACTCCGCGC
CGGCCCAGCGCCCGTCCAACCGTCCGGCCAGCGGTGGCGGCGGCCAGCGTCCGGCCTCGCAGTCGAGCTCGGCGCCGAAC
TTCGCCGACATGGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50

100

0.547
  ssb Vibrio cholerae strain A1552

50.829

100

0.541
  ssb Neisseria meningitidis MC58

49.432

100

0.512
  ssb Neisseria gonorrhoeae MS11

48.333

100

0.512
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.227

100

0.365