Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   R0D99_RS16615 Genome accession   NZ_CP136995
Coordinates   3472009..3473550 (+) Length   513 a.a.
NCBI ID   WP_317749272.1    Uniprot ID   -
Organism   Ottowia sp. SB7-C50     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3467009..3478550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0D99_RS16595 (R0D99_16595) glcE 3467599..3468711 (-) 1113 WP_317749268.1 glycolate oxidase subunit GlcE -
  R0D99_RS16600 (R0D99_16600) amt 3468971..3470494 (-) 1524 WP_317749269.1 ammonium transporter -
  R0D99_RS16605 (R0D99_16605) glnK 3470536..3470874 (-) 339 WP_317749270.1 P-II family nitrogen regulator -
  R0D99_RS16610 (R0D99_16610) - 3470941..3471726 (-) 786 WP_317749271.1 TorF family putative porin -
  R0D99_RS16615 (R0D99_16615) comM 3472009..3473550 (+) 1542 WP_317749272.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  R0D99_RS16620 (R0D99_16620) - 3473684..3474673 (+) 990 WP_317749273.1 tripartite tricarboxylate transporter substrate binding protein -
  R0D99_RS16625 (R0D99_16625) - 3474670..3476829 (+) 2160 WP_317749274.1 acetate--CoA ligase family protein -
  R0D99_RS16630 (R0D99_16630) - 3476924..3477661 (+) 738 WP_317749275.1 enoyl-CoA hydratase/isomerase family protein -

Sequence

Protein


Download         Length: 513 a.a.        Molecular weight: 53469.29 Da        Isoelectric Point: 8.3960

>NTDB_id=894124 R0D99_RS16615 WP_317749272.1 3472009..3473550(+) (comM) [Ottowia sp. SB7-C50]
MGLSLVQSRALMGLAAPAVTVEVHLANGLPSFTLVGLADVEVKEARERVRSALQNSGLAFPHNQRITVNLAPADLPKDSG
RFDLPIALGILAASGQIDGARLAGWEFAGELSLSGELRPVRGALAVAVALQQAGVDAQLVLPPGSAEEAALVPGLRVHRA
RHLLDVVARFLPEGAMPPDALPADGFARVPPAARSTPPAYPDLADVKGQAAARRALEIAAAGGHSLLMVGPPGTGKSMLA
QRFAGLLPPMSVSEALQSAAIASLGGAFALAQWAQRPTRAPHHSASAVALVGGGSPPRPGEISLAHEGVLFLDELPEFPR
AALEALREPLESGHITISRAAQRADFPARFQLVAAMNPCPCGYRGSTVRACRCTPDQVARYQGKLSGPLLDRIDLHVEVG
ALPAEELLTAAAGEPTSAVRERCLAARQRALARQGMPNQALHGQAIDEHARLDDAARPFLHTAATRLGWSARATHRALRV
ARSIADLAGSDAVTTAHVAEAVQYRRALVAAAQ

Nucleotide


Download         Length: 1542 bp        

>NTDB_id=894124 R0D99_RS16615 WP_317749272.1 3472009..3473550(+) (comM) [Ottowia sp. SB7-C50]
ATGGGTTTGAGTCTGGTGCAAAGCCGCGCCCTGATGGGGCTGGCCGCGCCCGCCGTGACGGTGGAGGTGCATCTGGCCAA
CGGCCTGCCCAGCTTCACGCTGGTGGGCCTGGCCGACGTGGAAGTGAAGGAAGCGCGCGAGCGCGTGCGCAGCGCGCTGC
AGAACAGCGGGCTGGCGTTTCCGCACAACCAGCGCATCACCGTCAACCTGGCGCCGGCCGATCTGCCCAAGGATTCGGGC
CGCTTCGACCTGCCGATTGCGCTGGGCATCCTGGCGGCCAGCGGCCAGATCGACGGCGCGCGGCTGGCCGGGTGGGAATT
TGCCGGCGAGCTGTCGCTGTCGGGCGAACTGCGCCCGGTGCGCGGCGCGCTGGCCGTGGCGGTGGCGCTGCAGCAGGCGG
GCGTCGACGCGCAACTGGTGCTGCCGCCCGGCAGCGCCGAAGAAGCCGCGCTGGTGCCCGGCCTGCGCGTGCACCGCGCG
CGCCATCTGCTGGACGTGGTGGCCCGCTTTCTGCCGGAAGGCGCCATGCCGCCCGACGCGCTGCCTGCCGACGGCTTTGC
CCGCGTGCCCCCCGCCGCGCGCAGCACGCCGCCGGCCTATCCCGACCTGGCCGACGTGAAGGGCCAGGCGGCCGCCCGGC
GCGCACTGGAAATCGCCGCCGCCGGCGGCCATTCGCTGCTGATGGTCGGCCCGCCCGGCACCGGCAAGTCCATGCTGGCG
CAGCGCTTTGCCGGACTGCTGCCGCCCATGAGCGTGTCCGAAGCCCTGCAGAGCGCCGCCATCGCCAGCCTGGGCGGCGC
CTTCGCGCTGGCGCAATGGGCGCAGCGCCCGACCCGCGCGCCGCACCACTCGGCCAGCGCGGTGGCACTGGTGGGCGGTG
GCTCGCCCCCGCGGCCGGGCGAAATCTCGCTGGCGCACGAAGGGGTCTTGTTTCTGGACGAACTGCCGGAGTTTCCGCGT
GCCGCGCTCGAAGCCCTGCGCGAGCCGCTGGAGTCGGGCCACATCACGATCAGCCGCGCGGCGCAGCGGGCCGACTTTCC
GGCGCGCTTTCAACTGGTCGCGGCCATGAACCCCTGCCCCTGCGGCTACCGCGGCTCGACTGTGCGGGCCTGCCGCTGCA
CGCCCGACCAGGTGGCGCGCTACCAGGGCAAGCTGTCCGGGCCGCTGCTCGACCGCATCGACCTGCATGTCGAAGTCGGC
GCGCTGCCGGCCGAAGAATTGCTGACCGCCGCCGCGGGCGAACCCACGTCCGCCGTGCGCGAGCGCTGCCTGGCGGCGCG
CCAGCGCGCGCTGGCGCGTCAGGGCATGCCCAACCAGGCGCTGCACGGGCAGGCCATCGACGAACACGCGCGGCTGGACG
ATGCGGCGCGGCCCTTTCTGCACACCGCCGCCACGCGCCTGGGCTGGAGCGCACGCGCCACGCACCGCGCGCTGCGGGTG
GCGCGCAGCATTGCCGACCTGGCCGGCAGCGATGCCGTGACCACCGCCCACGTGGCCGAGGCGGTGCAATACCGGCGCGC
GCTGGTGGCGGCGGCGCAGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(202-406)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(414-505)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.756

99.025

0.522
  comM Haemophilus influenzae Rd KW20

51.479

98.83

0.509
  comM Glaesserella parasuis strain SC1401

51.176

99.415

0.509
  comM Vibrio campbellii strain DS40M4

51.085

98.83

0.505
  comM Legionella pneumophila str. Paris

48.733

100

0.487
  comM Legionella pneumophila strain ERS1305867

48.733

100

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.602

99.805

0.415