Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   R0Q54_RS07455 Genome accession   NZ_CP136992
Coordinates   1376129..1376818 (-) Length   229 a.a.
NCBI ID   WP_014481054.1    Uniprot ID   -
Organism   Bacillus subtilis strain J46     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1371129..1381818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0Q54_RS07420 (R0Q54_07420) flgN 1371309..1371791 (-) 483 WP_014481048.1 flagellar protein FlgN -
  R0Q54_RS07425 (R0Q54_07425) flgM 1371807..1372073 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  R0Q54_RS07430 (R0Q54_07430) yvyF 1372154..1372573 (-) 420 WP_038429728.1 TIGR03826 family flagellar region protein -
  R0Q54_RS07435 (R0Q54_07435) comFC 1372646..1373368 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  R0Q54_RS07440 (R0Q54_07440) comFB 1373332..1373628 (-) 297 WP_003227989.1 late competence protein ComFB -
  R0Q54_RS07445 (R0Q54_07445) comFA 1373688..1375079 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  R0Q54_RS07450 (R0Q54_07450) fakBA 1375186..1376031 (-) 846 WP_014481053.1 DegV family protein -
  R0Q54_RS07455 (R0Q54_07455) degU 1376129..1376818 (-) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  R0Q54_RS07460 (R0Q54_07460) degS 1376901..1378058 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  R0Q54_RS07465 (R0Q54_07465) - 1378275..1378928 (+) 654 WP_014481055.1 YigZ family protein -
  R0Q54_RS07470 (R0Q54_07470) - 1378928..1379920 (+) 993 WP_014481056.1 LCP family protein -
  R0Q54_RS07475 (R0Q54_07475) - 1380518..1380982 (+) 465 WP_228394534.1 hypothetical protein -
  R0Q54_RS07480 (R0Q54_07480) - 1381031..1381486 (+) 456 WP_014481057.1 hypothetical protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25848.54 Da        Isoelectric Point: 5.9446

>NTDB_id=894041 R0Q54_RS07455 WP_014481054.1 1376129..1376818(-) (degU) [Bacillus subtilis strain J46]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKINVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=894041 R0Q54_RS07455 WP_014481054.1 1376129..1376818(-) (degU) [Bacillus subtilis strain J46]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATCAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996