Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   AAYT22_RS05820 Genome accession   NZ_CP154876
Coordinates   1150748..1151095 (-) Length   115 a.a.
NCBI ID   WP_001842260.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 20155336     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1145748..1156095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYT22_RS05790 (AAYT22_05775) - 1146068..1147003 (+) 936 WP_000401770.1 DHH family phosphoesterase -
  AAYT22_RS05795 (AAYT22_05780) - 1147099..1147341 (+) 243 WP_000710764.1 type B 50S ribosomal protein L31 -
  AAYT22_RS05800 (AAYT22_05785) - 1147398..1147616 (-) 219 WP_000028153.1 hypothetical protein -
  AAYT22_RS05805 (AAYT22_05790) - 1147613..1148189 (-) 577 Protein_1145 transposase -
  AAYT22_RS05810 (AAYT22_05795) gdhA 1148723..1150069 (+) 1347 WP_000199564.1 NADP-specific glutamate dehydrogenase -
  AAYT22_RS05815 (AAYT22_05800) - 1150565..1150735 (-) 171 WP_000711940.1 hypothetical protein -
  AAYT22_RS05820 (AAYT22_05805) comA/nlmT 1150748..1151095 (-) 348 WP_001842260.1 ATP-binding cassette domain-containing protein Regulator
  AAYT22_RS05825 (AAYT22_05810) comA 1151152..1151316 (-) 165 WP_109701449.1 hypothetical protein Regulator
  AAYT22_RS05830 (AAYT22_05815) - 1151342..1152166 (-) 825 Protein_1150 IS5 family transposase -
  AAYT22_RS05835 (AAYT22_05820) - 1152422..1153157 (+) 736 Protein_1151 IS630 family transposase -
  AAYT22_RS05840 (AAYT22_05825) - 1153391..1153843 (-) 453 Protein_1152 hypothetical protein -
  AAYT22_RS05845 (AAYT22_05830) - 1153845..1154132 (-) 288 WP_000869754.1 hypothetical protein -
  AAYT22_RS05850 (AAYT22_05835) - 1154727..1155125 (-) 399 Protein_1154 ATP-binding cassette domain-containing protein -
  AAYT22_RS05855 (AAYT22_05840) - 1155213..1155824 (-) 612 WP_000251931.1 V-type ATP synthase subunit D -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12810.92 Da        Isoelectric Point: 9.7118

>NTDB_id=893980 AAYT22_RS05820 WP_001842260.1 1150748..1151095(-) (comA/nlmT) [Streptococcus pneumoniae strain 20155336]
MAMPMKFNTIISEMGSNISGGQRQRIALARALINNPSIVILDEATSALDTINEERITKYIQSQGCTQIIIAHRLSTIKDA
DIIFVMKGGKIVESGNHKYLMTLGGEYYSLYTKRK

Nucleotide


Download         Length: 348 bp        

>NTDB_id=893980 AAYT22_RS05820 WP_001842260.1 1150748..1151095(-) (comA/nlmT) [Streptococcus pneumoniae strain 20155336]
ATGGCTATGCCGATGAAATTTAATACTATCATCTCAGAGATGGGGTCAAATATTTCAGGTGGGCAAAGGCAACGGATAGC
ACTGGCACGTGCATTAATAAATAATCCTAGTATTGTAATTTTAGATGAAGCAACTAGTGCATTAGACACTATTAATGAGG
AAAGAATAACAAAGTATATACAAAGTCAGGGTTGTACTCAAATAATTATAGCTCATAGATTGTCAACGATTAAGGATGCG
GATATTATTTTTGTAATGAAAGGTGGTAAGATTGTTGAGTCAGGAAATCATAAGTACTTAATGACTCTTGGTGGAGAGTA
CTACAGCTTATATACAAAAAGGAAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(8-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

49.091

95.652

0.47
  comA Streptococcus gordonii str. Challis substr. CH1

48.148

93.913

0.452
  comA Streptococcus mitis NCTC 12261

48.148

93.913

0.452
  comA Streptococcus mitis SK321

48.148

93.913

0.452
  comA Streptococcus pneumoniae R6

47.222

93.913

0.443
  comA Streptococcus pneumoniae Rx1

47.222

93.913

0.443
  comA Streptococcus pneumoniae D39

47.222

93.913

0.443
  comA Streptococcus pneumoniae TIGR4

47.222

93.913

0.443
  rcrQ Streptococcus mutans UA159

42.105

99.13

0.417
  rcrP Streptococcus mutans UA159

43.878

85.217

0.374