Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   R3J28_RS02465 Genome accession   NZ_CP136971
Coordinates   565633..567153 (+) Length   506 a.a.
NCBI ID   WP_154128483.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. multiplex strain Santa29b     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 560633..572153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3J28_RS02435 (R3J28_02420) rpsM 561348..561704 (+) 357 WP_004086542.1 30S ribosomal protein S13 -
  R3J28_RS02440 (R3J28_02425) rpsK 561720..562112 (+) 393 WP_004086543.1 30S ribosomal protein S11 -
  R3J28_RS02445 (R3J28_02430) rpsD 562127..562753 (+) 627 WP_004086544.1 30S ribosomal protein S4 -
  R3J28_RS02450 (R3J28_02435) - 562809..563807 (+) 999 WP_004086545.1 DNA-directed RNA polymerase subunit alpha -
  R3J28_RS02455 (R3J28_02440) rplQ 563937..564317 (+) 381 WP_004086546.1 50S ribosomal protein L17 -
  R3J28_RS02460 (R3J28_02445) - 565362..565622 (+) 261 WP_004086547.1 accessory factor UbiK family protein -
  R3J28_RS02465 (R3J28_02450) comM 565633..567153 (+) 1521 WP_154128483.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  R3J28_RS02470 (R3J28_02455) - 569858..570094 (+) 237 WP_202979880.1 hypothetical protein -
  R3J28_RS02475 (R3J28_02460) - 570367..571422 (+) 1056 Protein_470 lipase secretion chaperone -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54500.57 Da        Isoelectric Point: 8.0750

>NTDB_id=893889 R3J28_RS02465 WP_154128483.1 565633..567153(+) (comM) [Xylella fastidiosa subsp. multiplex strain Santa29b]
MSLALVHSRARAGVFAPSVRVEVHLSGGLPATQIVGLPEAAVRESRDRVRAALLCACFEYPARRITINLAPADLPKEGGR
FDLPIALGILAASGQLPLDALAGKEFLGELALTGELRSVDSVLPAALAASQAGHWLVIPESNGAEAAIAGCCEAYTARTL
LEVCAGLCGKTLLSAAQRFEVKADVLHDIPDISDVRGQEEARRVLEIAAAGGHHLLLIGSPGCGKTLLASRLPGLLPPAS
EQEALESASIASVSGHDLNLTHWRRRPYRAPHHSASAVALIGGGVQARPGEISLAHNGVLFMDELPEWQRKTLEALREPM
ESGVVTIARATRSVDYPARFQLVAAMNPCPCGWAGDSSGRCQCGVDAIRRYRRRISGPLLDRIDLQLEIPRLAPQLLRPS
TPRGEHSVTVRRRVTDSRTLQYNRQAGLNAHLGQAATERHCCLDVTDQQLLERAIEQLQLSARSMQRILRVARTIADLDG
STLITSMHLHEAIGYRRFDRTAFGIA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=893889 R3J28_RS02465 WP_154128483.1 565633..567153(+) (comM) [Xylella fastidiosa subsp. multiplex strain Santa29b]
ATGAGCTTGGCTTTGGTGCATAGCCGTGCCCGTGCTGGAGTTTTTGCACCCTCAGTTAGGGTTGAAGTACATTTGTCGGG
TGGCCTGCCTGCAACACAGATCGTTGGTTTGCCTGAGGCTGCTGTACGTGAATCTCGAGATCGAGTGCGTGCCGCGTTAT
TGTGTGCTTGCTTTGAATATCCGGCCCGACGTATCACCATTAATTTGGCGCCTGCTGACTTACCGAAGGAGGGCGGGCGC
TTTGATTTGCCGATTGCATTAGGAATCTTGGCCGCCAGCGGTCAATTGCCACTCGATGCTTTAGCAGGTAAGGAGTTCCT
AGGTGAACTTGCACTCACTGGAGAACTGCGTTCGGTTGACAGTGTGCTACCTGCGGCTTTAGCTGCATCACAGGCAGGAC
ACTGGCTGGTGATACCAGAAAGTAATGGTGCTGAAGCAGCAATCGCAGGGTGTTGTGAAGCTTATACTGCTCGCACTCTA
CTTGAGGTTTGTGCTGGCTTGTGCGGTAAAACATTATTGTCGGCTGCTCAGAGATTCGAAGTTAAGGCCGATGTATTGCA
TGATATTCCTGATATTTCTGACGTGCGCGGCCAAGAGGAAGCACGCCGTGTTCTTGAAATTGCTGCGGCTGGTGGACATC
ATTTGTTGCTGATTGGTAGTCCTGGTTGTGGTAAAACTCTTTTAGCCTCAAGATTGCCAGGCTTATTACCGCCAGCAAGC
GAGCAAGAAGCATTGGAGAGTGCGTCGATTGCCTCGGTGAGTGGGCATGATTTGAATCTGACTCATTGGCGACGACGTCC
CTATCGTGCTCCGCATCATAGTGCTAGCGCAGTTGCACTGATCGGTGGTGGGGTACAGGCACGTCCTGGTGAGATCTCGC
TCGCGCATAATGGCGTGCTATTTATGGATGAATTGCCCGAATGGCAACGCAAAACCTTGGAAGCCTTACGTGAACCCATG
GAATCAGGTGTAGTGACGATTGCTCGTGCCACACGTAGTGTGGATTATCCTGCCCGTTTTCAGTTAGTGGCTGCTATGAA
TCCTTGCCCTTGTGGTTGGGCAGGTGATTCGAGTGGACGTTGTCAATGTGGTGTGGATGCAATTCGACGTTATCGTCGCC
GTATTTCTGGTCCGTTATTGGACCGCATTGATCTACAGTTGGAAATACCACGGTTGGCACCGCAGCTACTGCGTCCTAGT
ACACCGCGTGGTGAACATAGTGTTACAGTGCGGAGGCGTGTCACTGATTCCAGGACTTTGCAATATAATCGACAAGCGGG
GCTTAATGCGCATCTGGGCCAAGCCGCAACCGAGCGTCATTGCTGTTTGGATGTGACCGACCAGCAGTTGCTGGAACGCG
CGATCGAACAGTTGCAGCTATCGGCACGTTCAATGCAACGGATTCTACGAGTAGCACGCACGATTGCTGATTTGGATGGT
AGCACATTAATCACCAGCATGCATTTGCATGAAGCGATCGGGTATCGTCGATTTGACCGTACAGCCTTTGGCATTGCTTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54

98.814

0.534
  comM Vibrio campbellii strain DS40M4

53.6

98.814

0.53
  comM Haemophilus influenzae Rd KW20

52.183

99.605

0.52
  comM Glaesserella parasuis strain SC1401

51.881

99.802

0.518
  comM Legionella pneumophila str. Paris

50

98.814

0.494
  comM Legionella pneumophila strain ERS1305867

50

98.814

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.301

100

0.441