Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AAG092_RS08915 Genome accession   NZ_CP154874
Coordinates   1831862..1832356 (-) Length   164 a.a.
NCBI ID   WP_373389413.1    Uniprot ID   -
Organism   Pseudomonas alcaligenes strain Med1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1826862..1837356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG092_RS08895 (AAG092_08835) - 1827324..1828604 (-) 1281 WP_373389577.1 D-arabinono-1,4-lactone oxidase -
  AAG092_RS08900 (AAG092_08840) - 1828720..1829103 (-) 384 WP_373389410.1 cytochrome c5 family protein -
  AAG092_RS08905 (AAG092_08845) - 1829221..1831326 (-) 2106 WP_373389411.1 TonB-dependent copper receptor -
  AAG092_RS08910 (AAG092_08850) - 1831387..1831749 (-) 363 WP_373389412.1 hypothetical protein -
  AAG092_RS08915 (AAG092_08855) ssb 1831862..1832356 (-) 495 WP_373389413.1 single-stranded DNA-binding protein Machinery gene
  AAG092_RS08920 (AAG092_08860) - 1832366..1833760 (-) 1395 WP_373389414.1 MFS transporter -
  AAG092_RS08925 (AAG092_08865) uvrA 1833894..1836728 (+) 2835 WP_373389415.1 excinuclease ABC subunit UvrA Machinery gene

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18122.05 Da        Isoelectric Point: 5.2779

>NTDB_id=893873 AAG092_RS08915 WP_373389413.1 1831862..1832356(-) (ssb) [Pseudomonas alcaligenes strain Med1]
MARGVNKVILIGNVGGDPETRYLPNGNAVTNITLATTDSWKDKQTGQQQDRTEWHRVVFFGKLAEIAGEYLRKGSQCYVE
GRLQTREWEKDGVKRYTTEIVVDMNGTLQLLGGRGGNQEGGGDYAPRQQQSRPAPQQAAPRPAPQAAAQQPAQDFDSFDD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=893873 AAG092_RS08915 WP_373389413.1 1831862..1832356(-) (ssb) [Pseudomonas alcaligenes strain Med1]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGATCGGCAACGTCGGCGGCGACCCGGAAACCCGTTACCTGCCCAATGGCAA
TGCGGTGACCAACATCACCCTGGCCACTACCGACAGCTGGAAGGACAAGCAGACCGGCCAGCAGCAGGACCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCAAGCTCGCCGAGATCGCCGGTGAATACCTGCGCAAGGGCAGCCAGTGCTACGTCGAA
GGCCGCCTGCAGACCCGCGAGTGGGAGAAGGACGGCGTCAAGCGCTACACCACCGAGATCGTGGTCGACATGAACGGCAC
CCTGCAGCTGCTCGGCGGCCGCGGTGGCAACCAGGAAGGCGGTGGTGACTACGCCCCGCGCCAGCAGCAGTCGCGCCCGG
CCCCGCAGCAGGCCGCCCCGCGCCCGGCGCCGCAAGCGGCGGCCCAGCAGCCGGCCCAGGACTTCGACAGCTTCGACGAC
GATATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.143

100

0.61
  ssb Glaesserella parasuis strain SC1401

48.066

100

0.53
  ssb Neisseria gonorrhoeae MS11

45.198

100

0.488
  ssb Neisseria meningitidis MC58

44.633

100

0.482