Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   AAG092_RS08925 Genome accession   NZ_CP154874
Coordinates   1833894..1836728 (+) Length   944 a.a.
NCBI ID   WP_373389415.1    Uniprot ID   -
Organism   Pseudomonas alcaligenes strain Med1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1828894..1841728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG092_RS08905 (AAG092_08845) - 1829221..1831326 (-) 2106 WP_373389411.1 TonB-dependent copper receptor -
  AAG092_RS08910 (AAG092_08850) - 1831387..1831749 (-) 363 WP_373389412.1 hypothetical protein -
  AAG092_RS08915 (AAG092_08855) ssb 1831862..1832356 (-) 495 WP_373389413.1 single-stranded DNA-binding protein Machinery gene
  AAG092_RS08920 (AAG092_08860) - 1832366..1833760 (-) 1395 WP_373389414.1 MFS transporter -
  AAG092_RS08925 (AAG092_08865) uvrA 1833894..1836728 (+) 2835 WP_373389415.1 excinuclease ABC subunit UvrA Machinery gene
  AAG092_RS08930 (AAG092_08870) katG 1836787..1838937 (-) 2151 WP_373389416.1 catalase/peroxidase HPI -
  AAG092_RS08935 (AAG092_08875) rplQ 1839147..1839536 (-) 390 WP_110683351.1 50S ribosomal protein L17 -
  AAG092_RS08940 (AAG092_08880) - 1839580..1840581 (-) 1002 WP_110683350.1 DNA-directed RNA polymerase subunit alpha -
  AAG092_RS08945 (AAG092_08885) rpsD 1840604..1841224 (-) 621 WP_110683349.1 30S ribosomal protein S4 -
  AAG092_RS08950 (AAG092_08890) rpsK 1841241..1841630 (-) 390 WP_021702690.1 30S ribosomal protein S11 -

Sequence

Protein


Download         Length: 944 a.a.        Molecular weight: 104270.84 Da        Isoelectric Point: 6.6076

>NTDB_id=893874 AAG092_RS08925 WP_373389415.1 1833894..1836728(+) (uvrA) [Pseudomonas alcaligenes strain Med1]
MDKILIRGARTHNLKNVDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSMMEKPDVDTIEGLS
PAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGIPRCPDHDVPLEAQTVSQMVDQVLALPEGRKLMLLAPVIRERKG
EHLAVFDELRAQGFVRARVNGKLYELDELPKLDKQKKHSIDVVVDRFKVREDLQQRLAESFETAINLADGIALVAPMDDE
EGDEIIFSARFACPHCGHSISELEPKLFSFNNPAGACPTCDGLGVKQFFDAKRLVNGELTLAEGAIRGWDRRNVYYFQML
GSLAAHYGFSLEEPFDDLAAEHQKVILFGSGTQNVDFKYLNDRGDIVKRSHPFEGIIPNLERRYRETESATVREELAKFL
STQPCPDCRGTRLRREARHVWVGERTLPAVTGLPVGEACDYFGGMSLTGRRGEIAEKILKEIRERLQFLVNVGLDYLTLD
RSADTLSGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQRDNERLLGTLTHLRNLGNTVIVVEHDEDAIRLADYVVDIG
PGAGVHGGRVVAEGTPDEVMNHPDSLTGKYLSGREKIRYPASRTPRDKKKLLKLKGARGNNLRNVDLEIPVGLLTCVTGV
SGSGKSTLINNTLFPITATALNGATTLETAPHDSFDGLQHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFAGVPEA
RSRGYGPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVPCDVCKGKRYNRETLEVKYKGKSITEVLDMTIEEARDFFD
AVPALARKLQTLVDVGLSYIKLGQSATTLSGGEAQRVKLSRELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRDH
GNTVVVIEHNLDVIKTADWIVDLGPEGGSKGGMIIATGTPEEVAANPASHTGHFLKPLLERDRA

Nucleotide


Download         Length: 2835 bp        

>NTDB_id=893874 AAG092_RS08925 WP_373389415.1 1833894..1836728(+) (uvrA) [Pseudomonas alcaligenes strain Med1]
GTGGACAAGATTCTGATCCGGGGTGCGCGCACCCATAACCTGAAAAACGTCGACCTGACCCTGCCGCGCGACAAGCTGAT
CGTGATCACCGGCCTGTCCGGTTCCGGCAAGTCGTCGCTGGCCTTCGACACCCTTTACGCCGAAGGCCAGCGCCGCTACG
TGGAGTCCCTGTCGGCCTACGCCCGGCAGTTCCTGTCGATGATGGAGAAGCCCGACGTCGACACCATCGAGGGCCTCTCC
CCGGCCATCTCCATCGAGCAGAAGTCCACTTCGCACAACCCGCGCTCGACGGTCGGCACCATCACCGAGATCTACGACTA
CCTGCGCCTGCTCTACGCCCGCGTCGGCATCCCGCGCTGCCCGGACCACGACGTGCCGCTGGAGGCGCAGACCGTCAGCC
AGATGGTCGACCAGGTGCTGGCCCTGCCCGAGGGCCGCAAGCTGATGCTGCTGGCCCCGGTGATCCGCGAGCGCAAGGGC
GAGCACCTGGCGGTGTTCGACGAGCTGCGTGCCCAGGGCTTCGTCCGCGCCCGGGTCAACGGCAAGCTCTATGAACTGGA
CGAGCTGCCCAAGCTGGACAAGCAGAAGAAGCACAGCATCGACGTGGTGGTGGACCGCTTCAAGGTGCGCGAGGACCTGC
AGCAGCGCCTGGCCGAATCCTTCGAGACCGCCATCAACCTGGCCGACGGCATTGCCCTGGTCGCGCCCATGGACGATGAA
GAAGGCGACGAGATCATCTTCTCCGCGCGCTTCGCCTGCCCGCACTGCGGCCACTCGATCAGCGAGCTGGAACCCAAGCT
GTTCTCCTTCAACAACCCGGCCGGCGCCTGCCCGACCTGCGACGGCCTGGGCGTGAAGCAGTTCTTCGACGCCAAGCGCC
TGGTCAACGGCGAGCTGACCCTGGCCGAGGGCGCCATCCGCGGCTGGGACCGGCGCAACGTCTACTACTTCCAGATGCTC
GGCTCGCTGGCCGCGCACTATGGCTTCAGCCTGGAGGAGCCGTTCGACGACCTGGCCGCCGAGCACCAGAAGGTCATCCT
GTTCGGCAGCGGCACGCAGAACGTCGACTTCAAGTACCTCAACGACCGTGGCGACATCGTCAAACGCTCGCACCCGTTCG
AGGGCATCATCCCCAACCTGGAGCGGCGCTACCGCGAGACCGAGTCGGCCACCGTGCGCGAGGAACTGGCCAAGTTCCTC
AGCACACAGCCCTGCCCGGACTGCCGCGGCACCCGCCTGCGCCGCGAGGCGCGCCACGTGTGGGTCGGCGAGCGCACCCT
GCCCGCGGTCACCGGACTGCCGGTGGGCGAGGCCTGCGACTACTTCGGCGGCATGAGCCTGACCGGGCGCCGCGGCGAGA
TCGCCGAGAAGATCCTCAAGGAAATCCGCGAACGCCTGCAGTTCCTGGTCAACGTCGGCCTTGATTACCTGACCCTGGAC
CGCAGCGCCGACACCCTGTCCGGCGGCGAGGCCCAGCGCATCCGCCTGGCCAGCCAGATCGGCGCGGGACTCGTCGGAGT
CATGTATATCCTCGACGAGCCCAGCATCGGCCTGCACCAGCGCGACAACGAGCGCCTGCTGGGCACCCTCACCCACCTGC
GCAACCTGGGCAACACGGTGATAGTCGTCGAGCACGACGAGGACGCCATCCGCCTGGCCGACTACGTGGTCGACATCGGC
CCCGGCGCCGGCGTGCACGGCGGCCGCGTGGTCGCCGAGGGCACCCCAGACGAGGTGATGAACCACCCCGACTCGCTGAC
CGGCAAGTACCTCTCCGGCCGCGAAAAGATCCGCTACCCGGCCAGCCGCACCCCGCGCGACAAGAAGAAGCTGCTCAAGC
TCAAGGGCGCCCGCGGCAACAACCTGCGCAACGTCGACCTGGAGATCCCGGTCGGCCTGCTCACCTGCGTCACCGGCGTG
TCCGGCTCGGGCAAGTCGACGCTGATCAACAACACCCTGTTCCCCATCACCGCCACCGCGCTGAACGGCGCCACCACCCT
GGAGACGGCGCCGCACGACTCGTTCGACGGCCTGCAGCACCTGGACAAGGTGGTCGACATCGACCAGAGCCCGATCGGCC
GAACGCCGCGCTCCAACCCGGCAACCTACACCGGCCTGTTCACCCCGATCCGCGAGCTGTTCGCCGGCGTGCCGGAGGCC
CGCTCGCGCGGCTACGGCCCGGGCCGCTTCAGCTTCAACGTCAAGGGCGGGCGCTGCGAGGCCTGCCAGGGCGACGGCGT
GATCAAGGTGGAGATGCACTTCCTGCCGGACATCTACGTGCCGTGCGACGTGTGCAAGGGCAAGCGCTACAACCGCGAGA
CACTGGAGGTGAAGTACAAGGGCAAGAGCATCACCGAGGTGCTCGACATGACCATCGAGGAGGCCCGCGACTTCTTCGAC
GCCGTGCCGGCCCTGGCGCGCAAGCTGCAGACCCTGGTCGACGTCGGCCTGTCCTATATCAAGCTGGGGCAGAGCGCGAC
CACCCTGTCCGGCGGAGAGGCGCAGCGGGTCAAGCTGAGTCGCGAGCTGTCCAAGCGCGACACCGGCAAGACCCTGTATA
TCCTCGACGAGCCGACCACCGGCCTGCACTTCGCCGATATCCAGCAGCTGCTCGACGTGCTGCACCGCCTGCGCGACCAC
GGCAACACCGTGGTGGTGATCGAGCACAACCTGGACGTGATCAAGACCGCCGACTGGATCGTCGACCTCGGCCCCGAGGG
CGGCTCCAAGGGCGGCATGATCATCGCCACCGGCACCCCGGAGGAGGTCGCCGCCAACCCGGCGTCGCATACCGGGCACT
TCCTCAAGCCCCTGCTGGAACGCGATCGCGCCTGA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(290-398)

UvrA interaction domain (UvrA_inter)

(130-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.505

100

0.576
  uvrA Streptococcus pneumoniae TIGR4

57.505

100

0.576
  uvrA Streptococcus pneumoniae D39

57.505

100

0.576