Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   CYJ98_RS10950 Genome accession   NZ_CP136962
Coordinates   2318435..2320567 (+) Length   710 a.a.
NCBI ID   WP_101756140.1    Uniprot ID   A0A9X7I3M0
Organism   Neisseria perflava strain UMB0023     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2313435..2325567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYJ98_RS10930 (CYJ98_010930) pilM 2315466..2316557 (+) 1092 WP_070825873.1 type IV pilus assembly protein PilM -
  CYJ98_RS10935 (CYJ98_010935) pilN 2316562..2317185 (+) 624 WP_101756142.1 PilN domain-containing protein Machinery gene
  CYJ98_RS10940 (CYJ98_010940) - 2317185..2317856 (+) 672 WP_101756141.1 type 4a pilus biogenesis protein PilO -
  CYJ98_RS10945 (CYJ98_010945) pilP 2317872..2318414 (+) 543 WP_070850266.1 pilus assembly protein PilP Machinery gene
  CYJ98_RS10950 (CYJ98_010950) pilQ 2318435..2320567 (+) 2133 WP_101756140.1 type IV pilus secretin PilQ Machinery gene
  CYJ98_RS10955 (CYJ98_010955) - 2320699..2321211 (+) 513 WP_039862528.1 shikimate kinase -
  CYJ98_RS10960 (CYJ98_010960) aroB 2321234..2322313 (+) 1080 WP_101756139.1 3-dehydroquinate synthase -
  CYJ98_RS10965 (CYJ98_010965) - 2322443..2323756 (-) 1314 WP_101756138.1 sensor histidine kinase -
  CYJ98_RS10970 (CYJ98_010970) - 2323786..2324463 (-) 678 WP_101756137.1 response regulator -
  CYJ98_RS10975 (CYJ98_010975) - 2324611..2325177 (-) 567 WP_070829674.1 NADPH-dependent FMN reductase -

Sequence

Protein


Download         Length: 710 a.a.        Molecular weight: 78061.21 Da        Isoelectric Point: 9.6985

>NTDB_id=893810 CYJ98_RS10950 WP_101756140.1 2318435..2320567(+) (pilQ) [Neisseria perflava strain UMB0023]
MKTKHMTKLFAGFSVALAVQTAFAGNITDINVSTLPDNQKIIKIRFDKDVTTPHGFVTSTPARIALDFANTNIRLPQPVL
EYADPLLNQITAAQNNDRARVVLGLNKISQYNTEIRGNEVWVFVNESTDQTNAAVVNERAATPSTARATQAYQAVSAANI
DFRKGARNSGIIELSAPGFSGQPDIKQQRDRVVVTLKNHTLPTQAQRSLDVADFNTPVQNVTLKRIGNSTQLIIRNNNAN
WDINTKASSGRFVFEVSPKAANTESGGLNQNANKSFKGRKISLDFQDVEVRTILQILAKESGVNIVASDTVKGTMTLSLK
DVPWDQALDLVMQARNLDMRRQGNIINIAPRDELLAKDKAFLQAEKEIAELGPLYSQTFQLKYKNVEEFRKILRLEEYDS
NNSNTRNTLLSNRGSALIDPATNTLIVTDNRGVIEKFRKLIDELDVPTRQVMVEARIVEAEDTFFRNLGVKFGSGGASGR
NAWGSNWSNAQTNYNTNASFNRGDVRYPTWSLDPNVSLPTAAAVNSIALVRAFSSGALGLEISASEEQGKSKTISNPRVL
TQDRKEAKIESGTEIPYQEASSSGATSITFKKAVLGLTVTPNITPDGQIIMTVKINRDTPIDCTVDSLTTKCINTKHLNT
QAMVEDGGTLIVGGIYEEESTNAVNKVPVLGDIPVVGNLFKSRGKRENRRELLIFITPRIMDNVGNNLRY

Nucleotide


Download         Length: 2133 bp        

>NTDB_id=893810 CYJ98_RS10950 WP_101756140.1 2318435..2320567(+) (pilQ) [Neisseria perflava strain UMB0023]
ATGAAAACCAAGCACATGACAAAATTATTTGCCGGCTTCAGCGTTGCCCTCGCTGTTCAGACGGCCTTTGCAGGCAATAT
TACCGATATCAACGTTTCCACTTTGCCTGACAACCAAAAAATCATCAAAATCCGTTTCGACAAAGACGTCACCACACCTC
ATGGTTTTGTAACATCTACTCCGGCGCGTATTGCATTGGATTTTGCCAACACCAATATCCGTTTGCCCCAGCCTGTTTTG
GAATATGCCGACCCCTTGCTGAATCAAATTACTGCGGCACAAAACAACGACCGCGCACGCGTGGTTTTGGGTTTGAACAA
AATCAGCCAATACAATACTGAAATTCGCGGCAACGAAGTTTGGGTATTCGTAAACGAATCTACTGACCAAACCAATGCGG
CCGTTGTAAATGAACGTGCAGCTACACCGTCTACCGCGCGCGCTACTCAGGCCTATCAAGCCGTTTCGGCCGCCAATATC
GATTTCCGCAAAGGCGCACGCAATTCCGGCATTATTGAACTGTCTGCCCCGGGTTTCAGCGGACAGCCGGACATCAAACA
GCAACGCGACCGCGTCGTTGTTACCTTGAAAAACCATACACTGCCGACACAAGCGCAACGCAGTTTGGATGTGGCTGACT
TCAATACGCCTGTACAAAACGTTACGCTCAAACGTATCGGCAATTCTACCCAGCTCATTATCCGCAACAATAATGCGAAT
TGGGACATCAATACCAAAGCCTCTTCCGGCCGTTTTGTATTTGAAGTATCGCCTAAAGCCGCCAATACCGAATCCGGCGG
CTTGAACCAAAATGCAAACAAATCGTTTAAAGGCCGTAAAATTTCCTTGGACTTCCAAGATGTAGAAGTCCGTACCATTT
TGCAGATTTTGGCGAAAGAATCCGGCGTGAATATTGTTGCCAGCGATACCGTCAAAGGCACCATGACTTTGTCCCTGAAA
GATGTACCTTGGGATCAGGCTTTGGATTTGGTCATGCAGGCGCGTAATTTGGATATGCGCCGTCAAGGCAACATCATCAA
TATTGCTCCTCGCGATGAATTGTTGGCAAAAGACAAAGCCTTCTTGCAGGCGGAAAAAGAGATTGCCGAATTGGGTCCGC
TGTATTCTCAAACCTTCCAGTTGAAATACAAAAACGTGGAAGAATTCCGCAAAATTCTGCGTTTGGAAGAATACGACAGC
AATAATTCCAATACCCGCAACACTTTGTTGAGCAACCGAGGCAGTGCCTTAATTGATCCGGCTACCAATACACTGATCGT
AACCGATAACCGCGGCGTGATTGAGAAATTCCGCAAACTAATTGATGAACTGGACGTTCCAACCCGTCAAGTGATGGTGG
AAGCGCGTATTGTGGAAGCAGAAGATACCTTCTTCCGCAACTTGGGCGTTAAATTCGGTTCCGGTGGTGCAAGTGGCCGT
AACGCATGGGGCAGCAACTGGAGCAATGCGCAAACCAACTACAATACCAATGCCTCGTTTAACCGTGGCGATGTCCGCTA
TCCTACTTGGTCTTTGGATCCGAATGTCAGTCTGCCGACCGCAGCCGCAGTCAACAGCATTGCGCTGGTGCGTGCGTTCT
CGTCCGGCGCATTGGGTTTGGAAATCAGCGCGTCTGAAGAACAAGGTAAGAGTAAAACTATTTCCAATCCGCGCGTGCTG
ACACAAGACCGCAAAGAAGCCAAAATTGAATCCGGTACGGAAATTCCTTACCAAGAGGCTTCTTCCAGCGGTGCGACTTC
GATTACCTTCAAGAAAGCCGTTTTGGGCTTGACCGTAACGCCGAACATTACGCCTGACGGTCAAATCATTATGACTGTGA
AGATTAATCGTGATACCCCGATCGACTGTACCGTAGATTCTCTGACAACCAAGTGTATCAACACCAAACACTTGAATACC
CAAGCCATGGTTGAAGATGGCGGTACGCTGATTGTCGGCGGTATTTACGAAGAAGAAAGCACCAATGCAGTGAACAAAGT
ACCTGTTTTGGGCGATATTCCTGTTGTCGGCAATCTGTTTAAATCACGCGGCAAACGTGAAAACCGCCGTGAGCTGTTGA
TCTTCATCACGCCGCGCATTATGGACAATGTGGGTAACAATCTGCGTTATTGA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(377-450)

Secretin and TonB N terminus short domain (STN)

(303-350)

Bacterial type II and III secretion system protein (Secretin)

(545-702)

AMIN domain (AMIN)

(38-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria gonorrhoeae strain FA1090

64.858

100

0.673
  pilQ Neisseria meningitidis MC58

60.792

100

0.67
  pilQ Neisseria meningitidis M1080

61.419

100

0.67