Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   CYJ98_RS10945 Genome accession   NZ_CP136962
Coordinates   2317872..2318414 (+) Length   180 a.a.
NCBI ID   WP_070850266.1    Uniprot ID   A0A9X7I4J8
Organism   Neisseria perflava strain UMB0023     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2312872..2323414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYJ98_RS10925 (CYJ98_010925) - 2312917..2315313 (-) 2397 WP_101756144.1 penicillin-binding protein 1A -
  CYJ98_RS10930 (CYJ98_010930) pilM 2315466..2316557 (+) 1092 WP_070825873.1 type IV pilus assembly protein PilM -
  CYJ98_RS10935 (CYJ98_010935) pilN 2316562..2317185 (+) 624 WP_101756142.1 PilN domain-containing protein Machinery gene
  CYJ98_RS10940 (CYJ98_010940) - 2317185..2317856 (+) 672 WP_101756141.1 type 4a pilus biogenesis protein PilO -
  CYJ98_RS10945 (CYJ98_010945) pilP 2317872..2318414 (+) 543 WP_070850266.1 pilus assembly protein PilP Machinery gene
  CYJ98_RS10950 (CYJ98_010950) pilQ 2318435..2320567 (+) 2133 WP_101756140.1 type IV pilus secretin PilQ Machinery gene
  CYJ98_RS10955 (CYJ98_010955) - 2320699..2321211 (+) 513 WP_039862528.1 shikimate kinase -
  CYJ98_RS10960 (CYJ98_010960) aroB 2321234..2322313 (+) 1080 WP_101756139.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 20045.48 Da        Isoelectric Point: 5.0099

>NTDB_id=893809 CYJ98_RS10945 WP_070850266.1 2317872..2318414(+) (pilP) [Neisseria perflava strain UMB0023]
MKKIILLLSLLPLAACTQSYEDLTQWMTQTRQEAKSKIIPFEEPTVTLPKPYNPPNFKGLNAFDSRRLDTAPKGGNAPDV
NRPKETLEAFSLENMTFVGTLQSGGKVSGFIKVNDHVYTVYPGNYIGQNYGRIQSITEDKIILTEQVEDSYGNWVYRKAE
LPLSSKDADSSDSSDSSNSN

Nucleotide


Download         Length: 543 bp        

>NTDB_id=893809 CYJ98_RS10945 WP_070850266.1 2317872..2318414(+) (pilP) [Neisseria perflava strain UMB0023]
ATGAAAAAAATCATCTTACTCTTAAGTCTTCTTCCCTTGGCAGCCTGCACGCAAAGCTATGAAGATTTGACTCAATGGAT
GACGCAAACCCGTCAGGAGGCGAAGTCCAAGATTATTCCGTTTGAAGAGCCGACGGTTACATTGCCCAAGCCGTATAACC
CTCCAAATTTTAAAGGCTTGAATGCGTTTGATTCACGCCGTTTGGATACTGCCCCCAAAGGCGGTAATGCGCCGGATGTA
AACCGTCCGAAAGAAACCTTGGAAGCCTTCAGTCTGGAAAACATGACTTTTGTCGGAACGCTTCAAAGCGGTGGTAAAGT
TTCCGGATTTATCAAAGTCAACGACCATGTTTATACCGTTTATCCCGGAAACTACATCGGTCAGAATTACGGCAGAATCC
AAAGTATTACTGAAGATAAAATTATCCTGACCGAGCAAGTTGAAGACAGCTACGGCAACTGGGTGTACCGGAAGGCCGAA
TTGCCGTTGAGCAGCAAAGACGCGGATTCTTCCGATAGCTCAGATAGTTCGAATTCAAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

60.588

94.444

0.572