Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   CYJ98_RS10935 Genome accession   NZ_CP136962
Coordinates   2316562..2317185 (+) Length   207 a.a.
NCBI ID   WP_101756142.1    Uniprot ID   -
Organism   Neisseria perflava strain UMB0023     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2311562..2322185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYJ98_RS10920 (CYJ98_010920) - 2312020..2312856 (-) 837 WP_101756145.1 PHP domain-containing protein -
  CYJ98_RS10925 (CYJ98_010925) - 2312917..2315313 (-) 2397 WP_101756144.1 penicillin-binding protein 1A -
  CYJ98_RS10930 (CYJ98_010930) pilM 2315466..2316557 (+) 1092 WP_070825873.1 type IV pilus assembly protein PilM -
  CYJ98_RS10935 (CYJ98_010935) pilN 2316562..2317185 (+) 624 WP_101756142.1 PilN domain-containing protein Machinery gene
  CYJ98_RS10940 (CYJ98_010940) - 2317185..2317856 (+) 672 WP_101756141.1 type 4a pilus biogenesis protein PilO -
  CYJ98_RS10945 (CYJ98_010945) pilP 2317872..2318414 (+) 543 WP_070850266.1 pilus assembly protein PilP Machinery gene
  CYJ98_RS10950 (CYJ98_010950) pilQ 2318435..2320567 (+) 2133 WP_101756140.1 type IV pilus secretin PilQ Machinery gene
  CYJ98_RS10955 (CYJ98_010955) - 2320699..2321211 (+) 513 WP_039862528.1 shikimate kinase -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23099.36 Da        Isoelectric Point: 4.8316

>NTDB_id=893808 CYJ98_RS10935 WP_101756142.1 2316562..2317185(+) (pilN) [Neisseria perflava strain UMB0023]
MIELTRINLLPYREEIKQRKQQQFKVLMLGAFAVGLGLAAATYLGIDSAIRNQEGRNNFLQTEIDRLDRELGEIDKLQQE
KEAFLAKKLKVEELQEKRYQAAYILDSLNALTPDNTYLTALEAESPTSYKISGHAISDNKIAVMMRSLPSTGIFLQPELL
SIKKVDNYQEFTLKSSINQVNTPAPAPTAQSSGEMAEPVAEPAPEAQ

Nucleotide


Download         Length: 624 bp        

>NTDB_id=893808 CYJ98_RS10935 WP_101756142.1 2316562..2317185(+) (pilN) [Neisseria perflava strain UMB0023]
ATGATCGAATTAACCAGAATCAACCTTCTTCCGTATCGGGAAGAGATTAAACAGCGCAAGCAGCAGCAATTCAAAGTATT
GATGCTTGGCGCTTTTGCAGTGGGTTTGGGCTTGGCAGCCGCTACCTATCTCGGTATTGACAGCGCCATCCGCAATCAAG
AAGGCCGCAACAACTTCCTGCAAACCGAAATTGACAGACTTGATAGAGAATTAGGCGAAATCGATAAACTTCAGCAAGAA
AAAGAAGCCTTCTTGGCTAAAAAGCTGAAAGTTGAAGAGTTGCAGGAAAAACGCTATCAAGCGGCCTATATCCTTGATTC
TTTGAATGCGCTTACGCCCGATAATACTTATTTGACTGCGTTGGAAGCAGAAAGCCCGACCAGCTATAAAATCAGCGGTC
ATGCCATCAGCGACAATAAAATCGCCGTTATGATGCGCTCCCTGCCAAGTACAGGTATTTTCTTGCAGCCTGAATTGTTG
AGCATTAAAAAAGTAGATAACTACCAAGAATTTACTTTGAAATCTTCAATCAACCAAGTGAATACGCCGGCTCCTGCACC
GACTGCCCAAAGCAGCGGTGAAATGGCCGAACCTGTGGCCGAACCTGCTCCGGAGGCTCAATAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(104-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

56.345

95.169

0.536