Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   CYJ98_RS09490 Genome accession   NZ_CP136962
Coordinates   2036326..2036613 (+) Length   95 a.a.
NCBI ID   WP_070813709.1    Uniprot ID   A0A9X7I379
Organism   Neisseria perflava strain UMB0023     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2031326..2041613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYJ98_RS09490 (CYJ98_009490) comE 2036326..2036613 (+) 288 WP_070813709.1 ComEA family DNA-binding protein Machinery gene
  CYJ98_RS09495 (CYJ98_009495) comP 2036793..2037287 (+) 495 WP_244169028.1 type IV pilin protein Machinery gene
  CYJ98_RS09500 (CYJ98_009500) pyrB 2038212..2039132 (+) 921 WP_070813708.1 aspartate carbamoyltransferase -
  CYJ98_RS09505 (CYJ98_009505) pyrI 2039143..2039601 (+) 459 WP_070813707.1 aspartate carbamoyltransferase regulatory subunit -
  CYJ98_RS09510 (CYJ98_009510) - 2039794..2040459 (+) 666 WP_101756376.1 hypothetical protein -
  CYJ98_RS09515 (CYJ98_009515) - 2040735..2041598 (+) 864 WP_070836923.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 9777.45 Da        Isoelectric Point: 10.4923

>NTDB_id=893802 CYJ98_RS09490 WP_070813709.1 2036326..2036613(+) (comE) [Neisseria perflava strain UMB0023]
MKKFLFGAFAAVCAAFSLAAVNINTASSAELEALPGIGPAKAKAIVEYRQKNGTFKSVEELKNVKGIGDAVLNKLKAEAT
VSSAAPKAAQPAVKK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=893802 CYJ98_RS09490 WP_070813709.1 2036326..2036613(+) (comE) [Neisseria perflava strain UMB0023]
ATGAAGAAATTTTTATTTGGTGCATTTGCCGCCGTCTGTGCAGCATTCTCTTTGGCCGCCGTGAACATCAATACCGCATC
TTCTGCCGAACTGGAGGCTTTGCCGGGTATCGGCCCGGCTAAGGCGAAGGCGATTGTGGAATACCGTCAGAAGAACGGTA
CGTTCAAATCGGTGGAGGAGCTGAAAAACGTGAAGGGTATCGGTGATGCGGTGCTGAACAAGTTGAAGGCGGAGGCGACG
GTTTCTTCTGCCGCACCTAAAGCCGCACAGCCTGCCGTGAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.878

86.316

0.474
  comEA Vibrio parahaemolyticus RIMD 2210633

43.023

90.526

0.389