Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   CYJ98_RS09495 Genome accession   NZ_CP136962
Coordinates   2036793..2037287 (+) Length   164 a.a.
NCBI ID   WP_244169028.1    Uniprot ID   A0AAF0YR11
Organism   Neisseria perflava strain UMB0023     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2031793..2042287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYJ98_RS09490 (CYJ98_009490) comE 2036326..2036613 (+) 288 WP_070813709.1 ComEA family DNA-binding protein Machinery gene
  CYJ98_RS09495 (CYJ98_009495) comP 2036793..2037287 (+) 495 WP_244169028.1 type IV pilin protein Machinery gene
  CYJ98_RS09500 (CYJ98_009500) pyrB 2038212..2039132 (+) 921 WP_070813708.1 aspartate carbamoyltransferase -
  CYJ98_RS09505 (CYJ98_009505) pyrI 2039143..2039601 (+) 459 WP_070813707.1 aspartate carbamoyltransferase regulatory subunit -
  CYJ98_RS09510 (CYJ98_009510) - 2039794..2040459 (+) 666 WP_101756376.1 hypothetical protein -
  CYJ98_RS09515 (CYJ98_009515) - 2040735..2041598 (+) 864 WP_070836923.1 GNAT family N-acetyltransferase -
  CYJ98_RS09520 (CYJ98_009520) - 2041622..2041750 (+) 129 WP_269208304.1 hypothetical protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18083.21 Da        Isoelectric Point: 10.1975

>NTDB_id=893803 CYJ98_RS09495 WP_244169028.1 2036793..2037287(+) (comP) [Neisseria perflava strain UMB0023]
MYLKTFDGKRNGATVQRGYSLVQLLVVMLLVSILATVALTAYRESVRSANLRAAHAALLENARFMEQFYAKKGSFKLTST
KWPELPVKEAGGFCIRMSGQAKGILEGKFTLKAVALDREAEPRVLRLNESLTAVVCGKMKVKGSCRDGEEIFRGNDAECK
PFMG

Nucleotide


Download         Length: 495 bp        

>NTDB_id=893803 CYJ98_RS09495 WP_244169028.1 2036793..2037287(+) (comP) [Neisseria perflava strain UMB0023]
ATGTACTTAAAAACATTTGACGGAAAACGGAATGGGGCAACTGTGCAGAGAGGCTACTCATTGGTACAGCTGTTGGTGGT
GATGCTGCTGGTTTCGATATTGGCGACGGTGGCATTGACCGCCTATCGGGAGTCAGTCCGTTCGGCCAACTTGCGTGCGG
CTCATGCCGCGCTGCTGGAAAATGCGCGCTTTATGGAGCAGTTCTATGCGAAAAAGGGCAGCTTTAAGCTGACGTCGACG
AAGTGGCCGGAGCTACCGGTAAAGGAGGCGGGCGGTTTCTGTATCAGGATGAGCGGTCAAGCTAAGGGTATCTTGGAGGG
AAAGTTTACCTTGAAGGCGGTGGCGCTGGATAGGGAGGCGGAGCCGAGGGTGCTGCGCTTGAACGAGTCGCTGACGGCGG
TGGTGTGCGGGAAGATGAAAGTGAAGGGCAGCTGTAGGGACGGTGAGGAGATATTTAGGGGCAATGATGCGGAGTGTAAG
CCTTTTATGGGGTAG

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(41-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria subflava NJ9703

92.073

100

0.921
  comP Neisseria meningitidis 8013

51.007

90.854

0.463
  comP Neisseria gonorrhoeae MS11

51.02

89.634

0.457