Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   WHP95_RS08145 Genome accession   NZ_CP154829
Coordinates   1549892..1550386 (+) Length   164 a.a.
NCBI ID   WP_002860433.1    Uniprot ID   Q5HTR6
Organism   Campylobacter jejuni strain Z1323HCJ0055     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1544892..1555386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP95_RS08130 (WHP95_08130) - 1546278..1547456 (-) 1179 WP_002858139.1 metal-dependent hydrolase -
  WHP95_RS08135 (WHP95_08135) gpsA 1547466..1548362 (-) 897 WP_075888380.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  WHP95_RS08140 (WHP95_08140) gatB 1548359..1549777 (-) 1419 WP_002868575.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  WHP95_RS08145 (WHP95_08145) luxS 1549892..1550386 (+) 495 WP_002860433.1 S-ribosylhomocysteine lyase Regulator
  WHP95_RS08150 (WHP95_08150) - 1550698..1551690 (+) 993 WP_002868574.1 isopenicillin N synthase family oxygenase -
  WHP95_RS08155 (WHP95_08155) - 1551701..1552471 (+) 771 WP_038814231.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  WHP95_RS08160 (WHP95_08160) metE 1552483..1554747 (+) 2265 WP_002898510.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18271.22 Da        Isoelectric Point: 6.3290

>NTDB_id=893576 WHP95_RS08145 WP_002860433.1 1549892..1550386(+) (luxS) [Campylobacter jejuni strain Z1323HCJ0055]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWEEAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=893576 WHP95_RS08145 WP_002860433.1 1549892..1550386(+) (luxS) [Campylobacter jejuni strain Z1323HCJ0055]
ATGCCATTATTAGACAGCTTTAAAGTTGACCATACTAAAATGCCAGCTCCTGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGCGTGTTTGATTTGCGTTTTTGTATACCAAATAAAGACATTATGAGCGAAAAAGGTACAC
ATACCTTAGAACATTTATTTGCAGGATTTATGAGAGATCATCTTAATTCAAATTCAGTTGAAATTATTGATATTTCACCT
ATGGGTTGTCGCACGGGTTTTTATATGAGTTTAATTGGAACACCAGATGAAAAAAGTGTTGCAAAAGCTTGGGAAGAAGC
TATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGCGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAGGTTTTAAATCTAGGTATTAGCATAATGAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5HTR6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.05

98.171

0.707