Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE/comE1   Type   Regulator
Locus tag   RJD36_RS11240 Genome accession   NZ_CP136943
Coordinates   2223623..2224354 (-) Length   243 a.a.
NCBI ID   WP_058692509.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain WUSP082     
Function   activate transcription of early competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2218623..2229354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD36_RS11195 (RJD36_11195) - 2218898..2219125 (-) 228 WP_003066551.1 hypothetical protein -
  RJD36_RS11200 (RJD36_11200) comD/comD3 2219257..2219571 (-) 315 WP_003066552.1 GHKL domain-containing protein Regulator
  RJD36_RS11205 (RJD36_11205) - 2219751..2219960 (-) 210 WP_231729916.1 hypothetical protein -
  RJD36_RS11210 (RJD36_11210) comE/comE2 2219973..2220194 (-) 222 WP_003066558.1 LytTR family transcriptional regulator DNA-binding domain-containing protein Regulator
  RJD36_RS11215 (RJD36_11215) - 2220166..2220528 (-) 363 WP_061100337.1 bacteriocin immunity protein -
  RJD36_RS11220 (RJD36_11220) - 2220579..2220731 (-) 153 WP_231729917.1 hypothetical protein -
  RJD36_RS11225 (RJD36_11225) - 2221080..2221391 (-) 312 WP_048791097.1 bacteriocin immunity protein -
  RJD36_RS11230 (RJD36_11230) - 2222149..2222286 (+) 138 WP_003066566.1 hypothetical protein -
  RJD36_RS11235 (RJD36_11235) - 2222308..2223615 (-) 1308 WP_003066569.1 sensor histidine kinase -
  RJD36_RS11240 (RJD36_11240) comE/comE1 2223623..2224354 (-) 732 WP_058692509.1 response regulator transcription factor Regulator
  RJD36_RS11245 (RJD36_11245) - 2224371..2224655 (-) 285 WP_231729918.1 LytTR family DNA-binding domain-containing protein -
  RJD36_RS11250 (RJD36_11250) - 2224898..2225506 (-) 609 WP_136596476.1 hypothetical protein -
  RJD36_RS11255 (RJD36_11255) - 2225678..2225974 (-) 297 WP_003066579.1 bacteriocin immunity protein -
  RJD36_RS11260 (RJD36_11260) - 2225974..2226192 (-) 219 WP_003066580.1 Blp family class II bacteriocin -
  RJD36_RS11265 (RJD36_11265) - 2226384..2226503 (-) 120 WP_253066439.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  RJD36_RS11270 (RJD36_11270) - 2226500..2226847 (-) 348 WP_231729919.1 CPBP family intramembrane glutamic endopeptidase -
  RJD36_RS11275 (RJD36_11275) - 2226877..2227056 (-) 180 WP_003066584.1 hypothetical protein -
  RJD36_RS11280 (RJD36_11280) - 2227423..2228528 (+) 1106 WP_249551291.1 IS3 family transposase -
  RJD36_RS11285 (RJD36_11285) - 2228847..2229077 (-) 231 WP_061100340.1 bacteriocin -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 28430.52 Da        Isoelectric Point: 5.2357

>NTDB_id=893566 RJD36_RS11240 WP_058692509.1 2223623..2224354(-) (comE/comE1) [Streptococcus pasteurianus strain WUSP082]
MLDIYVLEDNIIQQFRMEREIATIMAKNNWDYQRIEVFSSANEIIAKATEKGEHQIFFLDLEIRDDEKQGIDVAKAIREQ
DATAIIVFVTTHSEFMLLTYQALVGAIDFIDKNLNDQAFSERIELCLKEAMKHQNDNFGENSFLFETPKARVRVLYSDIL
YFETSPAVHRVILHTRNERVEFYATIAEIAKSDKRLFKCHRSFIINVDNVVRFDKAIRSVYFETGDSCLVSRDKIKPLLN
EMR

Nucleotide


Download         Length: 732 bp        

>NTDB_id=893566 RJD36_RS11240 WP_058692509.1 2223623..2224354(-) (comE/comE1) [Streptococcus pasteurianus strain WUSP082]
ATGTTAGATATTTATGTACTAGAGGATAATATCATACAGCAATTTCGTATGGAACGCGAGATTGCGACCATTATGGCAAA
AAATAATTGGGACTATCAGAGAATAGAGGTGTTTAGTTCCGCAAATGAGATTATAGCTAAGGCAACTGAAAAAGGAGAGC
ATCAAATTTTCTTTCTTGATTTAGAAATCAGAGACGACGAAAAACAAGGAATTGATGTCGCTAAAGCCATTCGTGAACAA
GATGCAACGGCTATCATTGTTTTTGTAACAACCCATTCAGAATTTATGCTGCTGACTTACCAAGCGTTAGTAGGGGCGAT
TGATTTTATTGATAAGAACCTGAATGACCAAGCATTTAGTGAACGCATAGAGTTGTGCCTAAAGGAAGCCATGAAACATC
AAAATGATAATTTCGGCGAAAATTCCTTTTTGTTTGAAACTCCTAAAGCACGTGTGCGCGTTCTATATAGTGACATTCTT
TATTTCGAAACATCTCCTGCCGTGCACCGTGTGATTTTGCATACGAGAAATGAAAGAGTGGAATTTTATGCGACGATTGC
AGAGATTGCTAAATCAGATAAACGTCTTTTCAAGTGTCACCGTTCTTTTATCATTAATGTGGATAATGTGGTCAGATTTG
ATAAAGCGATACGAAGTGTTTATTTCGAAACTGGGGACTCTTGCTTAGTTTCGAGGGATAAAATAAAACCTCTATTGAAT
GAGATGAGGTGA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(152-238)

Response regulator receiver domain (Response_reg)

(11-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/comE1 Streptococcus equinus JB1

71.193

100

0.712
  comE/blpR Streptococcus mutans UA159

48.954

98.354

0.481
  comE/comE2 Streptococcus equinus JB1

45.868

99.588

0.457