Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE/comE2   Type   Regulator
Locus tag   RJD36_RS11210 Genome accession   NZ_CP136943
Coordinates   2219973..2220194 (-) Length   73 a.a.
NCBI ID   WP_003066558.1    Uniprot ID   E0PG53
Organism   Streptococcus pasteurianus strain WUSP082     
Function   activate transcription of early competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2214973..2225194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD36_RS11165 (RJD36_11165) rmuC 2215013..2216287 (-) 1275 WP_003066543.1 DNA recombination protein RmuC -
  RJD36_RS11170 (RJD36_11170) - 2216289..2216918 (-) 630 WP_003066545.1 thiamine diphosphokinase -
  RJD36_RS11175 (RJD36_11175) rpe 2216911..2217573 (-) 663 WP_003066548.1 ribulose-phosphate 3-epimerase -
  RJD36_RS11180 (RJD36_11180) rsgA 2217580..2218452 (-) 873 WP_013852268.1 ribosome small subunit-dependent GTPase A -
  RJD36_RS11195 (RJD36_11195) - 2218898..2219125 (-) 228 WP_003066551.1 hypothetical protein -
  RJD36_RS11200 (RJD36_11200) comD/comD3 2219257..2219571 (-) 315 WP_003066552.1 GHKL domain-containing protein Regulator
  RJD36_RS11205 (RJD36_11205) - 2219751..2219960 (-) 210 WP_231729916.1 hypothetical protein -
  RJD36_RS11210 (RJD36_11210) comE/comE2 2219973..2220194 (-) 222 WP_003066558.1 LytTR family transcriptional regulator DNA-binding domain-containing protein Regulator
  RJD36_RS11215 (RJD36_11215) - 2220166..2220528 (-) 363 WP_061100337.1 bacteriocin immunity protein -
  RJD36_RS11220 (RJD36_11220) - 2220579..2220731 (-) 153 WP_231729917.1 hypothetical protein -
  RJD36_RS11225 (RJD36_11225) - 2221080..2221391 (-) 312 WP_048791097.1 bacteriocin immunity protein -
  RJD36_RS11230 (RJD36_11230) - 2222149..2222286 (+) 138 WP_003066566.1 hypothetical protein -
  RJD36_RS11235 (RJD36_11235) - 2222308..2223615 (-) 1308 WP_003066569.1 sensor histidine kinase -
  RJD36_RS11240 (RJD36_11240) comE/comE1 2223623..2224354 (-) 732 WP_058692509.1 response regulator transcription factor Regulator
  RJD36_RS11245 (RJD36_11245) - 2224371..2224655 (-) 285 WP_231729918.1 LytTR family DNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 73 a.a.        Molecular weight: 8346.75 Da        Isoelectric Point: 9.9655

>NTDB_id=893565 RJD36_RS11210 WP_003066558.1 2219973..2220194(-) (comE/comE2) [Streptococcus pasteurianus strain WUSP082]
MLVTWTGQRNFYGTIREVKNANHKLFQCQKSYLINPDNGVSLDKKEGIVYCVGGKSCYVSKKSMKELKIKLES

Nucleotide


Download         Length: 222 bp        

>NTDB_id=893565 RJD36_RS11210 WP_003066558.1 2219973..2220194(-) (comE/comE2) [Streptococcus pasteurianus strain WUSP082]
ATGTTGGTGACATGGACAGGACAGCGTAATTTTTACGGAACAATCAGAGAAGTTAAAAATGCAAATCATAAGCTATTTCA
ATGCCAAAAATCCTATCTGATTAATCCTGATAATGGCGTCAGTTTGGATAAAAAAGAAGGGATTGTTTATTGTGTAGGTG
GAAAATCTTGTTACGTTTCCAAAAAATCCATGAAAGAATTGAAAATTAAACTAGAAAGTTAG

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(2-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E0PG53

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/comE2 Streptococcus equinus JB1

61.111

98.63

0.603
  comE/comE1 Streptococcus equinus JB1

38.028

97.26

0.37