Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/comD3   Type   Regulator
Locus tag   RJD36_RS11200 Genome accession   NZ_CP136943
Coordinates   2219257..2219571 (-) Length   104 a.a.
NCBI ID   WP_003066552.1    Uniprot ID   E0PG50
Organism   Streptococcus pasteurianus strain WUSP082     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 2214257..2224571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD36_RS11165 (RJD36_11165) rmuC 2215013..2216287 (-) 1275 WP_003066543.1 DNA recombination protein RmuC -
  RJD36_RS11170 (RJD36_11170) - 2216289..2216918 (-) 630 WP_003066545.1 thiamine diphosphokinase -
  RJD36_RS11175 (RJD36_11175) rpe 2216911..2217573 (-) 663 WP_003066548.1 ribulose-phosphate 3-epimerase -
  RJD36_RS11180 (RJD36_11180) rsgA 2217580..2218452 (-) 873 WP_013852268.1 ribosome small subunit-dependent GTPase A -
  RJD36_RS11195 (RJD36_11195) - 2218898..2219125 (-) 228 WP_003066551.1 hypothetical protein -
  RJD36_RS11200 (RJD36_11200) comD/comD3 2219257..2219571 (-) 315 WP_003066552.1 GHKL domain-containing protein Regulator
  RJD36_RS11205 (RJD36_11205) - 2219751..2219960 (-) 210 WP_231729916.1 hypothetical protein -
  RJD36_RS11210 (RJD36_11210) comE/comE2 2219973..2220194 (-) 222 WP_003066558.1 LytTR family transcriptional regulator DNA-binding domain-containing protein Regulator
  RJD36_RS11215 (RJD36_11215) - 2220166..2220528 (-) 363 WP_061100337.1 bacteriocin immunity protein -
  RJD36_RS11220 (RJD36_11220) - 2220579..2220731 (-) 153 WP_231729917.1 hypothetical protein -
  RJD36_RS11225 (RJD36_11225) - 2221080..2221391 (-) 312 WP_048791097.1 bacteriocin immunity protein -
  RJD36_RS11230 (RJD36_11230) - 2222149..2222286 (+) 138 WP_003066566.1 hypothetical protein -
  RJD36_RS11235 (RJD36_11235) - 2222308..2223615 (-) 1308 WP_003066569.1 sensor histidine kinase -
  RJD36_RS11240 (RJD36_11240) comE/comE1 2223623..2224354 (-) 732 WP_058692509.1 response regulator transcription factor Regulator

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 11894.38 Da        Isoelectric Point: 4.6112

>NTDB_id=893564 RJD36_RS11200 WP_003066552.1 2219257..2219571(-) (comD/comD3) [Streptococcus pasteurianus strain WUSP082]
MDCFEIPRITYIHNLAILFDNRIEAAVLSDVPKISVANFYQDDNFVFMIENSTKEDSIPIDTVYQKGYSSKGDNRSIGLA
TVIEFHQEYGKLPIETSSSNHLFR

Nucleotide


Download         Length: 315 bp        

>NTDB_id=893564 RJD36_RS11200 WP_003066552.1 2219257..2219571(-) (comD/comD3) [Streptococcus pasteurianus strain WUSP082]
ATGGATTGTTTCGAAATTCCACGTATTACCTACATTCATAACCTTGCTATTCTGTTTGATAATAGGATTGAAGCCGCAGT
ATTATCAGATGTTCCTAAAATATCCGTAGCGAATTTTTATCAAGATGATAACTTTGTTTTTATGATTGAAAATTCAACCA
AAGAAGATAGTATTCCGATTGATACCGTTTATCAAAAAGGCTATTCAAGCAAAGGTGATAATCGTAGTATTGGCTTAGCA
ACAGTTATTGAATTTCATCAAGAATATGGCAAGCTACCCATTGAAACAAGCAGCTCAAATCACCTCTTTAGATAA

Domains

Predicted by InterproScan.

GHKL domain (HATPase_c_5)

(15-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E0PG50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD3 Streptococcus equinus JB1

58.586

95.192

0.558
  comD/comD2 Streptococcus equinus JB1

54.369

99.038

0.538
  comD/comD1 Streptococcus equinus JB1

48.98

94.231

0.462
  comD/blpH Streptococcus mutans UA159

43

96.154

0.413